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The map label for this gene is ycaN [H]

Identifier: 34496594

GI number: 34496594

Start: 1195461

End: 1196366

Strand: Reverse

Name: ycaN [H]

Synonym: CV_1139

Alternate gene names: 34496594

Gene position: 1196366-1195461 (Counterclockwise)

Preceding gene: 34496596

Following gene: 34496588

Centisome position: 25.18

GC content: 74.28

Gene sequence:

>906_bases
ATGTCGAAAATCCCGCAAGAGGCGCTGCAGGCTTTCTGCGCGATCGCCCGCCACCGCAGCTTCACCCGCGCCGGCGCCGA
GCTGGGCGTCAGCGCCTCGGCGCTCAGCCAGACGATGCGCCAGCTGGAAGGGGCGCTGGGCGTGCCGCTGCTGACCCGCA
CCACGCGCCAGGTGGCCCCGACCGAGGCCGGCGAGGCCTTGCTGGCTCGGCTCGCGCCGGCGCTGGACGAGATCCGCGCC
GCGCTGGACGAAGCCGGCCAGGCCCAAGGCCAGCCCGTCGGCCGGCTGCGCGTGACCTTGCCGCACACCGCGGCGCAGCT
GCTGTTCTATCCGGCGCTGGCCGATTTCGCCGCGCGCCATCCCAGGCTCAGGCTGGAGCTGGACGTCAACAACGGACTGG
TGGACATCGTCGCCCAACGCTTCGACGCCGGCGTCCGCTTCGGCGAGGCGCTGCAGCCCGGCATGCAGGCGCTGCCGGTC
AGCCGGCCGCTGCGCTTCGTCGTCGCCGCCGCGCCCGGCTACCTGAGCCGCCGCGGCGCGCCGCAGCACCCCGAGGATCT
GGCCGGCCATGCCTGCCTGGGCTACCGCTTCGGCGGCGGCCAGCACTACCGCTGGCAATTCGTCCGCGACGGGCTGCCGC
TGCAGCTGGCCGTAGACGGCCCGCTGATCGCCAACGACAACACGGCGATGCTGCATGCGGCGCTGGGCGGCGCCGGCCTC
GCCTACCTGGCCGAGCCGCTGATCGAGCCCTGGGTCGCCGCGGGCAAGCTGGCCGTGGTGCTGGACGGCTACGCGCCGCC
GGCCGAGGCGCTGTACCTGTACTACCCGCATCGACCGCAGCAGCCGGCCAAGCTCAGGGCGCTGATCGCCTTCCTGCGCG
AGCGCGCCGGGCTGCCGCAGGCGTGA

Upstream 100 bases:

>100_bases
CATTGCCTTGCTCCCTTGGTGAAAGTGCGTTCAGCATAGGCGCTGGCACTACGTAGAAAAATGGCTGAAAATGACAAACA
TTATTTAGCCAGGCTTCACA

Downstream 100 bases:

>100_bases
AAAAGCCCGCCGGGAGGCGGGCTGGATGAAATGGGCGGCTCTAGCCTCAGCGCGACTGCTGCGCCAGCCGCCAGGCGGCG
TCCTGCTTGTGGTAGCCCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSKIPQEALQAFCAIARHRSFTRAGAELGVSASALSQTMRQLEGALGVPLLTRTTRQVAPTEAGEALLARLAPALDEIRA
ALDEAGQAQGQPVGRLRVTLPHTAAQLLFYPALADFAARHPRLRLELDVNNGLVDIVAQRFDAGVRFGEALQPGMQALPV
SRPLRFVVAAAPGYLSRRGAPQHPEDLAGHACLGYRFGGGQHYRWQFVRDGLPLQLAVDGPLIANDNTAMLHAALGGAGL
AYLAEPLIEPWVAAGKLAVVLDGYAPPAEALYLYYPHRPQQPAKLRALIAFLRERAGLPQA

Sequences:

>Translated_301_residues
MSKIPQEALQAFCAIARHRSFTRAGAELGVSASALSQTMRQLEGALGVPLLTRTTRQVAPTEAGEALLARLAPALDEIRA
ALDEAGQAQGQPVGRLRVTLPHTAAQLLFYPALADFAARHPRLRLELDVNNGLVDIVAQRFDAGVRFGEALQPGMQALPV
SRPLRFVVAAAPGYLSRRGAPQHPEDLAGHACLGYRFGGGQHYRWQFVRDGLPLQLAVDGPLIANDNTAMLHAALGGAGL
AYLAEPLIEPWVAAGKLAVVLDGYAPPAEALYLYYPHRPQQPAKLRALIAFLRERAGLPQA
>Mature_300_residues
SKIPQEALQAFCAIARHRSFTRAGAELGVSASALSQTMRQLEGALGVPLLTRTTRQVAPTEAGEALLARLAPALDEIRAA
LDEAGQAQGQPVGRLRVTLPHTAAQLLFYPALADFAARHPRLRLELDVNNGLVDIVAQRFDAGVRFGEALQPGMQALPVS
RPLRFVVAAAPGYLSRRGAPQHPEDLAGHACLGYRFGGGQHYRWQFVRDGLPLQLAVDGPLIANDNTAMLHAALGGAGLA
YLAEPLIEPWVAAGKLAVVLDGYAPPAEALYLYYPHRPQQPAKLRALIAFLRERAGLPQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=38.5159010600707, Blast_Score=218, Evalue=3e-58,
Organism=Escherichia coli, GI1787589, Length=271, Percent_Identity=39.4833948339483, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=30.6122448979592, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=31.1864406779661, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI145693193, Length=302, Percent_Identity=31.4569536423841, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=27.7397260273973, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=26.4406779661017, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI157672245, Length=165, Percent_Identity=35.7575757575758, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789173, Length=309, Percent_Identity=27.831715210356, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786448, Length=300, Percent_Identity=25.6666666666667, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788748, Length=150, Percent_Identity=34, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=304, Percent_Identity=25.9868421052632, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787601, Length=137, Percent_Identity=29.1970802919708, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32255; Mature: 32123

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIPQEALQAFCAIARHRSFTRAGAELGVSASALSQTMRQLEGALGVPLLTRTTRQVAP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
TEAGEALLARLAPALDEIRAALDEAGQAQGQPVGRLRVTLPHTAAQLLFYPALADFAARH
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCC
PRLRLELDVNNGLVDIVAQRFDAGVRFGEALQPGMQALPVSRPLRFVVAAAPGYLSRRGA
CCEEEEEECCCCHHHHHHHHHHHCCCHHHHHCCHHHHCCCCCCCEEEEEECCCHHHCCCC
PQHPEDLAGHACLGYRFGGGQHYRWQFVRDGLPLQLAVDGPLIANDNTAMLHAALGGAGL
CCCHHHHCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCEEECCCCEEEEEHHCCCHH
AYLAEPLIEPWVAAGKLAVVLDGYAPPAEALYLYYPHRPQQPAKLRALIAFLRERAGLPQ
HHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
A
C
>Mature Secondary Structure 
SKIPQEALQAFCAIARHRSFTRAGAELGVSASALSQTMRQLEGALGVPLLTRTTRQVAP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
TEAGEALLARLAPALDEIRAALDEAGQAQGQPVGRLRVTLPHTAAQLLFYPALADFAARH
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCC
PRLRLELDVNNGLVDIVAQRFDAGVRFGEALQPGMQALPVSRPLRFVVAAAPGYLSRRGA
CCEEEEEECCCCHHHHHHHHHHHCCCHHHHHCCHHHHCCCCCCCEEEEEECCCHHHCCCC
PQHPEDLAGHACLGYRFGGGQHYRWQFVRDGLPLQLAVDGPLIANDNTAMLHAALGGAGL
CCCHHHHCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCEEECCCCEEEEEHHCCCHH
AYLAEPLIEPWVAAGKLAVVLDGYAPPAEALYLYYPHRPQQPAKLRALIAFLRERAGLPQ
HHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]