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The map label for this gene is yddU [C]

Identifier: 34496463

GI number: 34496463

Start: 1046437

End: 1047627

Strand: Reverse

Name: yddU [C]

Synonym: CV_1008

Alternate gene names: 34496463

Gene position: 1047627-1046437 (Counterclockwise)

Preceding gene: 34496464

Following gene: 34496461

Centisome position: 22.05

GC content: 66.75

Gene sequence:

>1191_bases
ATGGACATCCACGACATCCTGGTCATCGACGACAGCCGCCTGCAGCGACAGCATGCGATGGATCTGTGCCGCCAGTTGGG
CATCGCCAGCGTGCGGGAGGCGCCGGACGGCGAACGCGGCCTGACCCTGATGCGGGTGCAGATGCCCGACCTCCTGCTGC
TGGACCTGGAAATGCCCAAGCAGGACGGCGTGCAGGTGATGCAGGAGATGGCCCGCGCCGGCCTTTCCTCCCCCGTAATC
ATCACCTCGGGCAAGGACTATCTGCTGATCTCCACCGTGGAACTGATGGGCCGGGAGCTCGGCTTGCCGGTGCTGGGCTG
CCTGCAGAAGCCGCTGCAGCTGCCCGCCCTGCTCGACCTGATGCACCGGGTATGGACGCCCGCCGAGCGGCCCGACGACG
CGCCGCTGGCGGCGGATGAGGTCCGCGTCGCGCTGGAAAAAGGCCAGATCATCCCCTACTACCAGCCCAAGGTGAACCTG
GCCGACGGCAGGGTCAAGGGCGCCGAGATGCTGGCGCGCTGGCAGCACCCGGACCTGGGGTTGATTCCGCCCAGCCGCTT
CATCCCGGTGATAGAAGACAACGGCTGGGCCACCGAGCTGACCATGCTGATGCTGCGCCAGGGCCTAACCCAATGGCAGG
AATGGGCGCGGCATGGCCTGCGCCTGCCGCTGTCGGTCAACCTGTCCGCGCTGTCGCTGCGCGGCGACGAACTGGTGGAC
GAGATAGAATGCTATGTGCGCGGCAGCCACGTGCCGGCGCGCTTCATCATCTTCGAGGTGACGGAAACCGCCATCGTCGA
CAACCTGGCGCAGGCGATAGGCTGCGCGGTCCGATTGCGGCTGGCGGGACTGGGCCTGTCCATCGACGATTTCGGCACCG
GTTTCGCCACCCTGCAGCAGCTGACCCGCTTTCCCTTCACCGAATTGAAAATCGACCAATCGCTGGTCACCGGCATCTCC
GACAAGCCCCACCTGCAGGCCGTGTTCAACAGCATCATCGAAATGGCGCGCCGGCTGCAGCTGGCCACTGTCGCCGAAGG
CATAGAAACGGCCGAAGACTACCAGTTGATGGCCGAGCGCGGCTGCCAGCTGGGCCAGGGTTATTACTTCGCCCGCCCGC
TGCCCGCCGCCGCCTTCCTGGAATGGACGCGGCAGCCGCCGGTGCTGCCCACCGCCGGCGCCGCGAGCTGA

Upstream 100 bases:

>100_bases
ATGCCCAAGGAAGCGATCAAGCTGGGCGCGGCCGACGAGGTGATGCCGCTGGAACTGATAGCCAAGGCCATCTGCCGCTG
AACCTCACGGACCCTGCCGA

Downstream 100 bases:

>100_bases
GCGCCGCTCAGCACGACCACAGCGGCGGTTCGTCCATCAGCGCGATCTGCTCGCGCAGGGCCAGTATCTGCTCCTCCCAG
TAGCGCGGCGCGCCAAACCA

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MDIHDILVIDDSRLQRQHAMDLCRQLGIASVREAPDGERGLTLMRVQMPDLLLLDLEMPKQDGVQVMQEMARAGLSSPVI
ITSGKDYLLISTVELMGRELGLPVLGCLQKPLQLPALLDLMHRVWTPAERPDDAPLAADEVRVALEKGQIIPYYQPKVNL
ADGRVKGAEMLARWQHPDLGLIPPSRFIPVIEDNGWATELTMLMLRQGLTQWQEWARHGLRLPLSVNLSALSLRGDELVD
EIECYVRGSHVPARFIIFEVTETAIVDNLAQAIGCAVRLRLAGLGLSIDDFGTGFATLQQLTRFPFTELKIDQSLVTGIS
DKPHLQAVFNSIIEMARRLQLATVAEGIETAEDYQLMAERGCQLGQGYYFARPLPAAAFLEWTRQPPVLPTAGAAS

Sequences:

>Translated_396_residues
MDIHDILVIDDSRLQRQHAMDLCRQLGIASVREAPDGERGLTLMRVQMPDLLLLDLEMPKQDGVQVMQEMARAGLSSPVI
ITSGKDYLLISTVELMGRELGLPVLGCLQKPLQLPALLDLMHRVWTPAERPDDAPLAADEVRVALEKGQIIPYYQPKVNL
ADGRVKGAEMLARWQHPDLGLIPPSRFIPVIEDNGWATELTMLMLRQGLTQWQEWARHGLRLPLSVNLSALSLRGDELVD
EIECYVRGSHVPARFIIFEVTETAIVDNLAQAIGCAVRLRLAGLGLSIDDFGTGFATLQQLTRFPFTELKIDQSLVTGIS
DKPHLQAVFNSIIEMARRLQLATVAEGIETAEDYQLMAERGCQLGQGYYFARPLPAAAFLEWTRQPPVLPTAGAAS
>Mature_396_residues
MDIHDILVIDDSRLQRQHAMDLCRQLGIASVREAPDGERGLTLMRVQMPDLLLLDLEMPKQDGVQVMQEMARAGLSSPVI
ITSGKDYLLISTVELMGRELGLPVLGCLQKPLQLPALLDLMHRVWTPAERPDDAPLAADEVRVALEKGQIIPYYQPKVNL
ADGRVKGAEMLARWQHPDLGLIPPSRFIPVIEDNGWATELTMLMLRQGLTQWQEWARHGLRLPLSVNLSALSLRGDELVD
EIECYVRGSHVPARFIIFEVTETAIVDNLAQAIGCAVRLRLAGLGLSIDDFGTGFATLQQLTRFPFTELKIDQSLVTGIS
DKPHLQAVFNSIIEMARRLQLATVAEGIETAEDYQLMAERGCQLGQGYYFARPLPAAAFLEWTRQPPVLPTAGAAS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=251, Percent_Identity=35.0597609561753, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI1787541, Length=246, Percent_Identity=33.3333333333333, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI87081743, Length=269, Percent_Identity=33.457249070632, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=33.469387755102, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI87081845, Length=262, Percent_Identity=30.5343511450382, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI226510982, Length=242, Percent_Identity=36.7768595041322, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=31.3492063492063, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1786507, Length=250, Percent_Identity=32, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=29.2, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787055, Length=262, Percent_Identity=27.0992366412214, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87082096, Length=245, Percent_Identity=30.2040816326531, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788849, Length=240, Percent_Identity=28.75, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787410, Length=166, Percent_Identity=32.5301204819277, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 43910; Mature: 43910

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIHDILVIDDSRLQRQHAMDLCRQLGIASVREAPDGERGLTLMRVQMPDLLLLDLEMPK
CCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEEEECCCEEEEEECCCC
QDGVQVMQEMARAGLSSPVIITSGKDYLLISTVELMGRELGLPVLGCLQKPLQLPALLDL
CHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEHHHHHHHCCCHHHHHHHHHHCCHHHHHH
MHRVWTPAERPDDAPLAADEVRVALEKGQIIPYYQPKVNLADGRVKGAEMLARWQHPDLG
HHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCC
LIPPSRFIPVIEDNGWATELTMLMLRQGLTQWQEWARHGLRLPLSVNLSALSLRGDELVD
CCCHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCHHHHH
EIECYVRGSHVPARFIIFEVTETAIVDNLAQAIGCAVRLRLAGLGLSIDDFGTGFATLQQ
HHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHH
LTRFPFTELKIDQSLVTGISDKPHLQAVFNSIIEMARRLQLATVAEGIETAEDYQLMAER
HHHCCCHHHEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GCQLGQGYYFARPLPAAAFLEWTRQPPVLPTAGAAS
CCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDIHDILVIDDSRLQRQHAMDLCRQLGIASVREAPDGERGLTLMRVQMPDLLLLDLEMPK
CCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEEEECCCEEEEEECCCC
QDGVQVMQEMARAGLSSPVIITSGKDYLLISTVELMGRELGLPVLGCLQKPLQLPALLDL
CHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEHHHHHHHCCCHHHHHHHHHHCCHHHHHH
MHRVWTPAERPDDAPLAADEVRVALEKGQIIPYYQPKVNLADGRVKGAEMLARWQHPDLG
HHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCC
LIPPSRFIPVIEDNGWATELTMLMLRQGLTQWQEWARHGLRLPLSVNLSALSLRGDELVD
CCCHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCHHHHH
EIECYVRGSHVPARFIIFEVTETAIVDNLAQAIGCAVRLRLAGLGLSIDDFGTGFATLQQ
HHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHH
LTRFPFTELKIDQSLVTGISDKPHLQAVFNSIIEMARRLQLATVAEGIETAEDYQLMAER
HHHCCCHHHEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GCQLGQGYYFARPLPAAAFLEWTRQPPVLPTAGAAS
CCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]