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The map label for this gene is sodB2 [H]

Identifier: 34496322

GI number: 34496322

Start: 896399

End: 897103

Strand: Reverse

Name: sodB2 [H]

Synonym: CV_0867

Alternate gene names: 34496322

Gene position: 897103-896399 (Counterclockwise)

Preceding gene: 34496323

Following gene: 34496320

Centisome position: 18.88

GC content: 66.52

Gene sequence:

>705_bases
ATGCCCGACCCGAACGCCGAACTCTCCCGCCGCGGCTTCCTGCTTTCCGCCGCCGGTTCGCTGGCCGCCCTGGCCCTGCC
CGGCCTGCCAGGCGCCGCCCATGCCTCGTCGGCCCAGGTCCTGCCGCCGCTGCCCTACGCCGACAATGCGCTGGAGCCGG
TAATCTCGGCGCGCACCATAGGCTTCCACTACGGCAAGCACCACAAGGCTTACCTCGACAACCTGAACAAGCTGATCGCC
GGCCGCGACTACGCCGACCTGCCGCTGGAGGACATCCTCACCCGCTCCTTCGGCCCCGCCAGCGATGCCGCCGTGTTCAA
CAACGCCGCCCAACTGTGGAACCACACTTTCTATTGGCGCAGCATGCGGCCGAAAGGCGGCGGTATCCCGCCTCAAGGGC
TGAGGGAAAAAATAGAAGCCTCGTTCGGCAGCGTGGACGCCTGTAAGCGGCAGCTGGCCGGCGCCGCCATTTCCCAGTTC
GGCAGCGGCTGGGCCTGGCTGGTGCAGGACGGCGACAAGCTGCGCGTGGTGAAGACCGGCAACGCCGACAATCCGCTCAC
CTCCGGACTGACTCCGCTGCTCAATGTCGACGTGTGGGAGCACGCCTACTACCTGGACTACCAGAACCGCCGCGCCGACT
ATGTCAACGCGGTGCTGGACAAGCTGATCGACTGGGAATTCGCGCAGCGCAACCTGAAGGCCTGA

Upstream 100 bases:

>100_bases
TCCATCCGGCCATGGCGGCCACCAGAACATCCCGAATCGTGCTTGCATGCGTGATCGACCACGGCGCACCCGCGCCCCCT
GACCCCTTTAGGAGATCGCC

Downstream 100 bases:

>100_bases
CGCCCGCCAGGCTCACAGCTGATCGTAGACGCCGCCCAGCGCGCGCAGCACTTCGGCGGCGGCGTCCAGCGTCCGGTCGT
CCATCTCCCGCAGCGCGCGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MPDPNAELSRRGFLLSAAGSLAALALPGLPGAAHASSAQVLPPLPYADNALEPVISARTIGFHYGKHHKAYLDNLNKLIA
GRDYADLPLEDILTRSFGPASDAAVFNNAAQLWNHTFYWRSMRPKGGGIPPQGLREKIEASFGSVDACKRQLAGAAISQF
GSGWAWLVQDGDKLRVVKTGNADNPLTSGLTPLLNVDVWEHAYYLDYQNRRADYVNAVLDKLIDWEFAQRNLKA

Sequences:

>Translated_234_residues
MPDPNAELSRRGFLLSAAGSLAALALPGLPGAAHASSAQVLPPLPYADNALEPVISARTIGFHYGKHHKAYLDNLNKLIA
GRDYADLPLEDILTRSFGPASDAAVFNNAAQLWNHTFYWRSMRPKGGGIPPQGLREKIEASFGSVDACKRQLAGAAISQF
GSGWAWLVQDGDKLRVVKTGNADNPLTSGLTPLLNVDVWEHAYYLDYQNRRADYVNAVLDKLIDWEFAQRNLKA
>Mature_233_residues
PDPNAELSRRGFLLSAAGSLAALALPGLPGAAHASSAQVLPPLPYADNALEPVISARTIGFHYGKHHKAYLDNLNKLIAG
RDYADLPLEDILTRSFGPASDAAVFNNAAQLWNHTFYWRSMRPKGGGIPPQGLREKIEASFGSVDACKRQLAGAAISQFG
SGWAWLVQDGDKLRVVKTGNADNPLTSGLTPLLNVDVWEHAYYLDYQNRRADYVNAVLDKLIDWEFAQRNLKA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=217, Percent_Identity=38.2488479262673, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI67782305, Length=217, Percent_Identity=38.2488479262673, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI67782309, Length=217, Percent_Identity=32.7188940092166, Blast_Score=101, Evalue=7e-22,
Organism=Escherichia coli, GI1787946, Length=195, Percent_Identity=54.3589743589744, Blast_Score=207, Evalue=7e-55,
Organism=Escherichia coli, GI1790342, Length=199, Percent_Identity=43.7185929648241, Blast_Score=153, Evalue=7e-39,
Organism=Caenorhabditis elegans, GI17506561, Length=233, Percent_Identity=36.480686695279, Blast_Score=130, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI17569479, Length=221, Percent_Identity=34.841628959276, Blast_Score=122, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6321796, Length=239, Percent_Identity=34.3096234309623, Blast_Score=119, Evalue=3e-28,
Organism=Drosophila melanogaster, GI17136812, Length=222, Percent_Identity=33.7837837837838, Blast_Score=116, Evalue=1e-26,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 25525; Mature: 25394

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDPNAELSRRGFLLSAAGSLAALALPGLPGAAHASSAQVLPPLPYADNALEPVISARTI
CCCCCCCHHHCCEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
GFHYGKHHKAYLDNLNKLIAGRDYADLPLEDILTRSFGPASDAAVFNNAAQLWNHTFYWR
HHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEE
SMRPKGGGIPPQGLREKIEASFGSVDACKRQLAGAAISQFGSGWAWLVQDGDKLRVVKTG
ECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECC
NADNPLTSGLTPLLNVDVWEHAYYLDYQNRRADYVNAVLDKLIDWEFAQRNLKA
CCCCCHHHCCCHHHCCHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PDPNAELSRRGFLLSAAGSLAALALPGLPGAAHASSAQVLPPLPYADNALEPVISARTI
CCCCCCHHHCCEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
GFHYGKHHKAYLDNLNKLIAGRDYADLPLEDILTRSFGPASDAAVFNNAAQLWNHTFYWR
HHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEE
SMRPKGGGIPPQGLREKIEASFGSVDACKRQLAGAAISQFGSGWAWLVQDGDKLRVVKTG
ECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECC
NADNPLTSGLTPLLNVDVWEHAYYLDYQNRRADYVNAVLDKLIDWEFAQRNLKA
CCCCCHHHCCCHHHCCHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]