| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34496105
Identifier: 34496105
GI number: 34496105
Start: 679165
End: 680436
Strand: Reverse
Name: 34496105
Synonym: CV_0650
Alternate gene names: NA
Gene position: 680436-679165 (Counterclockwise)
Preceding gene: 34496106
Following gene: 34496104
Centisome position: 14.32
GC content: 35.53
Gene sequence:
>1272_bases ATGGAGCACCTTAGAATTCAATTTTTCTCTACCAACCAATTAGGAGGAGTTATTGATATTGGCTATGCTGTAGAGCACAG CAAGATAGCTATTGATTTTCTTTCGGTATTCGGTGCGAAGTATGAAGAAAAAAGCCAAGCTATAAAAATGGATTACAAGC ATCAGAATACTGAAGAGTTCAAAGAAAATTTGGGGAGATTTATATCAAAATACAAGAATGTGCTACCTCAGATTCAACAG CTAGGCTCACAATTCAATAAACTAAACCCTGGTGAATGGTTCTTTACCCTCTCACCCATAGAATTAACGACTGCACAACA GTATGAACTTGAGAAAGAATTAAATTGCCTGAATGGATGCCAAAACGATTTCAGCGAAAGTGAATTAAAATCTATATTTG GCGGCGTGATGGAAAACTATGAAATAGTGACTTTCGATTTAGACAAAGGCAAAAAGATAAAGATTGGCGAGGGTTTAAAA GCTAATAGAGTATGCAGGTTTTGTTATAATAAAATTCCTGACATAACCTTCAACAAAGAAGCTCATGCGATCTCCGAGGC TCTCGGCAATAAAATCCTAATCCTGAACGATGAGTGTGATAGATGCAATGATTTTTTTGATGAAAACATTGAAAGAGACT TTATTTATTATCACGACATGGCAAGGACATTATATGGGGTAAAAAACAAAACCAACGCCCCTCCAAAACTGAAAGGAAAA GATTTTGAAATTTCTTACACGGAACAAGGCAATCTATCTATAGCCATCGTACAAAACAATCCAGGCGATGATAACGCCGA GATGCCGGAGAATGTGTCTTTTAAAACTGGAAATAAGATAAAGATACAGAATCTTTACAAAGCCCTATGCAAATTCGCGT TAAGCGTAATCGATTCAAAGCACTTAAGTAATTTTGAAGACACCATTCAATGGATAAAAAACCAGAAAGAAGTGAATATT TTACCCAAAGTGGCGATATTGAATAGCGCTGCATTCTTTACGACCCGACCTGAGATCACTTTGCACTTAAGAAATAATGA CAATACAACACTGCCATATCTGGTTGGGGAATTTAGACTTACATGCTACCTGTATATTTTTATTGTTCCGCTTTCTAGTA AAGACACACACTGCTTCATTGACGATCAAGAGTATCGTGATTTTTTGAATTGCTTTAAGCATGTTTGCTCTAATAATGGA TTTAGTTTCATCGACTTCTCTGAAAACATTGAAAGAGAAATAAACTTTAAGATTAATCTTGAAAAATTGTAA
Upstream 100 bases:
>100_bases ATAATGAATACAATGGATTTCCTGGCGACGCTGCTTGTGTCATCACTATCAATTGTTACGCAGCCCCACGCGTAAACTAT ACGTCTTAGAAAGGTAAGCA
Downstream 100 bases:
>100_bases TTCTACAACCCCTTGATCCAATTAAAGAGTCGTTTGTGCTTCTCGCTGCTTCTTGGCCTCAGCTATGACTAACGTTACAA GTTTGTTTTTTTCAACACAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 423; Mature: 423
Protein sequence:
>423_residues MEHLRIQFFSTNQLGGVIDIGYAVEHSKIAIDFLSVFGAKYEEKSQAIKMDYKHQNTEEFKENLGRFISKYKNVLPQIQQ LGSQFNKLNPGEWFFTLSPIELTTAQQYELEKELNCLNGCQNDFSESELKSIFGGVMENYEIVTFDLDKGKKIKIGEGLK ANRVCRFCYNKIPDITFNKEAHAISEALGNKILILNDECDRCNDFFDENIERDFIYYHDMARTLYGVKNKTNAPPKLKGK DFEISYTEQGNLSIAIVQNNPGDDNAEMPENVSFKTGNKIKIQNLYKALCKFALSVIDSKHLSNFEDTIQWIKNQKEVNI LPKVAILNSAAFFTTRPEITLHLRNNDNTTLPYLVGEFRLTCYLYIFIVPLSSKDTHCFIDDQEYRDFLNCFKHVCSNNG FSFIDFSENIEREINFKINLEKL
Sequences:
>Translated_423_residues MEHLRIQFFSTNQLGGVIDIGYAVEHSKIAIDFLSVFGAKYEEKSQAIKMDYKHQNTEEFKENLGRFISKYKNVLPQIQQ LGSQFNKLNPGEWFFTLSPIELTTAQQYELEKELNCLNGCQNDFSESELKSIFGGVMENYEIVTFDLDKGKKIKIGEGLK ANRVCRFCYNKIPDITFNKEAHAISEALGNKILILNDECDRCNDFFDENIERDFIYYHDMARTLYGVKNKTNAPPKLKGK DFEISYTEQGNLSIAIVQNNPGDDNAEMPENVSFKTGNKIKIQNLYKALCKFALSVIDSKHLSNFEDTIQWIKNQKEVNI LPKVAILNSAAFFTTRPEITLHLRNNDNTTLPYLVGEFRLTCYLYIFIVPLSSKDTHCFIDDQEYRDFLNCFKHVCSNNG FSFIDFSENIEREINFKINLEKL >Mature_423_residues MEHLRIQFFSTNQLGGVIDIGYAVEHSKIAIDFLSVFGAKYEEKSQAIKMDYKHQNTEEFKENLGRFISKYKNVLPQIQQ LGSQFNKLNPGEWFFTLSPIELTTAQQYELEKELNCLNGCQNDFSESELKSIFGGVMENYEIVTFDLDKGKKIKIGEGLK ANRVCRFCYNKIPDITFNKEAHAISEALGNKILILNDECDRCNDFFDENIERDFIYYHDMARTLYGVKNKTNAPPKLKGK DFEISYTEQGNLSIAIVQNNPGDDNAEMPENVSFKTGNKIKIQNLYKALCKFALSVIDSKHLSNFEDTIQWIKNQKEVNI LPKVAILNSAAFFTTRPEITLHLRNNDNTTLPYLVGEFRLTCYLYIFIVPLSSKDTHCFIDDQEYRDFLNCFKHVCSNNG FSFIDFSENIEREINFKINLEKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48902; Mature: 48902
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHLRIQFFSTNQLGGVIDIGYAVEHSKIAIDFLSVFGAKYEEKSQAIKMDYKHQNTEEF CCCEEEEEEECCCCCCEEEECEEECCCHHHHHHHHHHCCCHHCCCHHEEECCCCCCHHHH KENLGRFISKYKNVLPQIQQLGSQFNKLNPGEWFFTLSPIELTTAQQYELEKELNCLNGC HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEECCCHHHHHHHHHHHHHHC QNDFSESELKSIFGGVMENYEIVTFDLDKGKKIKIGEGLKANRVCRFCYNKIPDITFNKE CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCEECCH AHAISEALGNKILILNDECDRCNDFFDENIERDFIYYHDMARTLYGVKNKTNAPPKLKGK HHHHHHHHCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC DFEISYTEQGNLSIAIVQNNPGDDNAEMPENVSFKTGNKIKIQNLYKALCKFALSVIDSK CEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH HLSNFEDTIQWIKNQKEVNILPKVAILNSAAFFTTRPEITLHLRNNDNTTLPYLVGEFRL HCCCHHHHHHHHHCCCCCEECCEEHEECCCEEEEECCCEEEEEECCCCCCCCHHHHHHHH TCYLYIFIVPLSSKDTHCFIDDQEYRDFLNCFKHVCSNNGFSFIDFSENIEREINFKINL EEEEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEE EKL ECC >Mature Secondary Structure MEHLRIQFFSTNQLGGVIDIGYAVEHSKIAIDFLSVFGAKYEEKSQAIKMDYKHQNTEEF CCCEEEEEEECCCCCCEEEECEEECCCHHHHHHHHHHCCCHHCCCHHEEECCCCCCHHHH KENLGRFISKYKNVLPQIQQLGSQFNKLNPGEWFFTLSPIELTTAQQYELEKELNCLNGC HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEECCCHHHHHHHHHHHHHHC QNDFSESELKSIFGGVMENYEIVTFDLDKGKKIKIGEGLKANRVCRFCYNKIPDITFNKE CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCEECCH AHAISEALGNKILILNDECDRCNDFFDENIERDFIYYHDMARTLYGVKNKTNAPPKLKGK HHHHHHHHCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC DFEISYTEQGNLSIAIVQNNPGDDNAEMPENVSFKTGNKIKIQNLYKALCKFALSVIDSK CEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH HLSNFEDTIQWIKNQKEVNILPKVAILNSAAFFTTRPEITLHLRNNDNTTLPYLVGEFRL HCCCHHHHHHHHHCCCCCEECCEEHEECCCEEEEECCCEEEEEECCCCCCCCHHHHHHHH TCYLYIFIVPLSSKDTHCFIDDQEYRDFLNCFKHVCSNNGFSFIDFSENIEREINFKINL EEEEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEE EKL ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA