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The map label for this gene is intB [H]

Identifier: 34496106

GI number: 34496106

Start: 680663

End: 681856

Strand: Reverse

Name: intB [H]

Synonym: CV_0651

Alternate gene names: 34496106

Gene position: 681856-680663 (Counterclockwise)

Preceding gene: 34496107

Following gene: 34496105

Centisome position: 14.35

GC content: 59.46

Gene sequence:

>1194_bases
ATGCCGCTCACCGACACCGCCATCCGCAATGCCAAGCCCAGGGAAGACGGAAAACCTGCCAAGTTGGCAGACGGCGGCAG
CCTCTTTCTTTGGGTCATGCCCAACGGGGCGAAGTACTGGCGCATGGCCTACCGCTTCGACGGCAAACAGAAAACCCTCG
CCTTTGGCGTCTACCCCACTACTTCGCTGAAAGACGCGCGCGAGAAGCGTGAAGCTGCGCGAAAACTGCTGGCAGCAGGA
ACCGACCCCAACGCAGCCAAGAAAGAGCAGAAGCGCGAGCGGCAGCTCACCGTTGAAAATTCCTTCGAAATTGTCGCCCG
CGAGTGGTACGACAAACAGCTGCCACGCTGGACCGATGACCACGCAGTCAGAATCCTCGACTCCCTCAAGGCTGACGCCT
TCCCCGACCTAGGCAAGCTGCCGGTTTCCCAACTAACCGCACCGGTGATCTTGGATACCATCCGCAAGATAGAAAAACGC
GGCGCAGTGGAAACCGCCCAACGCGTGCTGCAAAGAATCAGCGCCGTCATCCGCTATGCCATCCAGACCGGCCGAGCCGT
CCACAACCCGGCAACGGACCTTACAGGCGCGATACGTGCCAAGAAGGTGGAACACCGCCCTGCGCTGCCGCGCGGCGAGC
TCCGCGAGTTCTACCGGCGCCTGGCGGCCGAACCGCTCTATATTCCGACCCGCATTGCCATGCACCTGCTGATGCTGACC
TTTGTTCGCCCAGGCGAACTACGCGCCGCGCGCTGGGAAGAGTTTGACGAAGAACGCGCAGAATGGCGCATCCCGGCCGA
GCGCATGAAGATGCGCGAGCCTCACCTTGTACCGCTATCGCGCCAGGCGCTGGAACTGCTGAAGGAGTTGCGGCCGCTGA
CTGGCAAAAGCGCCCTGCTCTTCCCGGCCGTGACAGACCTCAAGAAGCCCATGTCCGAAAACACGCTTGGCTATGCCATG
GGCCGCATGGGCTACAAAGGCACGGCGACCCCTCACGGCTTCCGTGCTCTGGCTTCAACAGTTCTTAACGAAGAAGGCTT
TGATCCAGATATCATAGAAAAGCAGCTCGCACATGCAGAGCGCAACAAAGTGCGTGCTGCTTACCATCGAGCGGAATATT
TGGAAGAGCGCAGGAAAATGATGCAGTGGTGGGCTGAATTCTTAGGTCGCCATCAAAAAAGCAGTATTGACTAG

Upstream 100 bases:

>100_bases
TTCCGTCCGGCACCATCCAGGCAAAGCCGGCGCAAAATGTTGGTATATATATTGGTACGAAGATACCATCACGCTGATAC
CAACAGCAGGAAATGCCAAC

Downstream 100 bases:

>100_bases
CAACGTAAAGAAAAATGTCCGCACCCGGCCAAGAGCAGACCTTTACCCTAAATCACCCAAAATAGTCACATTGCCAACTA
CATCAATGGCATATTTATCT

Product: prophage CP4-like integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MPLTDTAIRNAKPREDGKPAKLADGGSLFLWVMPNGAKYWRMAYRFDGKQKTLAFGVYPTTSLKDAREKREAARKLLAAG
TDPNAAKKEQKRERQLTVENSFEIVAREWYDKQLPRWTDDHAVRILDSLKADAFPDLGKLPVSQLTAPVILDTIRKIEKR
GAVETAQRVLQRISAVIRYAIQTGRAVHNPATDLTGAIRAKKVEHRPALPRGELREFYRRLAAEPLYIPTRIAMHLLMLT
FVRPGELRAARWEEFDEERAEWRIPAERMKMREPHLVPLSRQALELLKELRPLTGKSALLFPAVTDLKKPMSENTLGYAM
GRMGYKGTATPHGFRALASTVLNEEGFDPDIIEKQLAHAERNKVRAAYHRAEYLEERRKMMQWWAEFLGRHQKSSID

Sequences:

>Translated_397_residues
MPLTDTAIRNAKPREDGKPAKLADGGSLFLWVMPNGAKYWRMAYRFDGKQKTLAFGVYPTTSLKDAREKREAARKLLAAG
TDPNAAKKEQKRERQLTVENSFEIVAREWYDKQLPRWTDDHAVRILDSLKADAFPDLGKLPVSQLTAPVILDTIRKIEKR
GAVETAQRVLQRISAVIRYAIQTGRAVHNPATDLTGAIRAKKVEHRPALPRGELREFYRRLAAEPLYIPTRIAMHLLMLT
FVRPGELRAARWEEFDEERAEWRIPAERMKMREPHLVPLSRQALELLKELRPLTGKSALLFPAVTDLKKPMSENTLGYAM
GRMGYKGTATPHGFRALASTVLNEEGFDPDIIEKQLAHAERNKVRAAYHRAEYLEERRKMMQWWAEFLGRHQKSSID
>Mature_396_residues
PLTDTAIRNAKPREDGKPAKLADGGSLFLWVMPNGAKYWRMAYRFDGKQKTLAFGVYPTTSLKDAREKREAARKLLAAGT
DPNAAKKEQKRERQLTVENSFEIVAREWYDKQLPRWTDDHAVRILDSLKADAFPDLGKLPVSQLTAPVILDTIRKIEKRG
AVETAQRVLQRISAVIRYAIQTGRAVHNPATDLTGAIRAKKVEHRPALPRGELREFYRRLAAEPLYIPTRIAMHLLMLTF
VRPGELRAARWEEFDEERAEWRIPAERMKMREPHLVPLSRQALELLKELRPLTGKSALLFPAVTDLKKPMSENTLGYAMG
RMGYKGTATPHGFRALASTVLNEEGFDPDIIEKQLAHAERNKVRAAYHRAEYLEERRKMMQWWAEFLGRHQKSSID

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=397, Percent_Identity=39.0428211586902, Blast_Score=293, Evalue=2e-80,
Organism=Escherichia coli, GI1788690, Length=387, Percent_Identity=39.2764857881137, Blast_Score=271, Evalue=5e-74,
Organism=Escherichia coli, GI145693166, Length=389, Percent_Identity=39.8457583547558, Blast_Score=257, Evalue=9e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45511; Mature: 45380

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTDTAIRNAKPREDGKPAKLADGGSLFLWVMPNGAKYWRMAYRFDGKQKTLAFGVYPT
CCCCCHHHCCCCCCCCCCCCEEECCCCEEEEEECCCCHHHHHHHEECCCCCEEEEECCCC
TSLKDAREKREAARKLLAAGTDPNAAKKEQKRERQLTVENSFEIVAREWYDKQLPRWTDD
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCH
HAVRILDSLKADAFPDLGKLPVSQLTAPVILDTIRKIEKRGAVETAQRVLQRISAVIRYA
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IQTGRAVHNPATDLTGAIRAKKVEHRPALPRGELREFYRRLAAEPLYIPTRIAMHLLMLT
HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
FVRPGELRAARWEEFDEERAEWRIPAERMKMREPHLVPLSRQALELLKELRPLTGKSALL
HCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEH
FPAVTDLKKPMSENTLGYAMGRMGYKGTATPHGFRALASTVLNEEGFDPDIIEKQLAHAE
HHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RNKVRAAYHRAEYLEERRKMMQWWAEFLGRHQKSSID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC
>Mature Secondary Structure 
PLTDTAIRNAKPREDGKPAKLADGGSLFLWVMPNGAKYWRMAYRFDGKQKTLAFGVYPT
CCCCHHHCCCCCCCCCCCCEEECCCCEEEEEECCCCHHHHHHHEECCCCCEEEEECCCC
TSLKDAREKREAARKLLAAGTDPNAAKKEQKRERQLTVENSFEIVAREWYDKQLPRWTDD
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCH
HAVRILDSLKADAFPDLGKLPVSQLTAPVILDTIRKIEKRGAVETAQRVLQRISAVIRYA
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IQTGRAVHNPATDLTGAIRAKKVEHRPALPRGELREFYRRLAAEPLYIPTRIAMHLLMLT
HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
FVRPGELRAARWEEFDEERAEWRIPAERMKMREPHLVPLSRQALELLKELRPLTGKSALL
HCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEH
FPAVTDLKKPMSENTLGYAMGRMGYKGTATPHGFRALASTVLNEEGFDPDIIEKQLAHAE
HHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RNKVRAAYHRAEYLEERRKMMQWWAEFLGRHQKSSID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]