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The map label for this gene is psd

Identifier: 34496046

GI number: 34496046

Start: 627993

End: 628835

Strand: Reverse

Name: psd

Synonym: CV_0591

Alternate gene names: 34496046

Gene position: 628835-627993 (Counterclockwise)

Preceding gene: 34496047

Following gene: 34496040

Centisome position: 13.24

GC content: 67.85

Gene sequence:

>843_bases
GTGTCCGAGCGCCTGTTCGTGCTGTCTCAACATATCCTGCCCAAACTGGCGCTGACCCGGCTGGCGGGCCGCTTCGCAGA
CTGGAAGGGCGGCGGCATCACCACGGCCGCCATCCGCCGTTTCATCGCCCGCTACAACGTGGACATGGGCGAAGCCGCCG
ACAGCGATCCGGCGGCCTACGCCACCTTCAATGATTTCTTCACTCGCGCGCTCAAGCCGGGCGTCCGCCCCGTGGCCGAC
GCTCGCCTCGTCTGCCCGGTGGACGGCGCGGTCAGCCAGCTCGGCGCCATCGACAGCGGCCGCATCTTCCAAGCCAAGGG
CCGCGATTACAGCGCCACCGCGCTATTGGCCGGCGATGCCGATCTCGCCGCCCGCTTCGCCGACGGCCACTTCGCCACCA
TCTACCTCAGCCCGCGCGACTATCACCGCATCCACATGCCTTGCGCCGGCAGGCTGCTGGAAATGACGTATGTGCCCGGC
GACCTGTACTCGGTGAATCCCGCCACCGCACGCGGCGTGGACCGTCTGTTCGCCCGCAACGAGCGGGTGGTATGCGTGTT
CGAGGACGAGCAAAGCCAGCCCTTCGTGATGGTGCTGGTCGGCGCCACCATCGTCGGCAGCATGGCCACCGTCTGGCATG
GCGTGGTCAATCCGCCGCGCCGGCCGGCGGTGGAAAAATGGGATTACCGCGGCCAGGACATCCGCCTGGCCAAGGGCGAG
GAAATGGGCCGCTTCCTGCTCGGCTCCACCGTGGTGCTGCTGTACCCGGCTGGTCCGCTCAAATTCAATCCGCAGTGGCA
AGCCGCCAGCCCGGTGCGGATGGGCGAGGCGATGGCGTCCTGA

Upstream 100 bases:

>100_bases
AGGGGCGCGCAAGGATGGATTGGCCCGCCGCCAGACGGCGGGCCGGTTCCGGCTAGCTGCGATATAATGCGAGGTTCACT
ACCATTATCAGGAAACGCCC

Downstream 100 bases:

>100_bases
GCCGGACGCGTTTCCCGCTCGGCGCGCAAGCGCTGCCGCTCAAGGATGGACAAAACGGCTGTCGCGGCTCCGGGGCGCTT
ACCCCAGGCCGGACAGCCGT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSERLFVLSQHILPKLALTRLAGRFADWKGGGITTAAIRRFIARYNVDMGEAADSDPAAYATFNDFFTRALKPGVRPVAD
ARLVCPVDGAVSQLGAIDSGRIFQAKGRDYSATALLAGDADLAARFADGHFATIYLSPRDYHRIHMPCAGRLLEMTYVPG
DLYSVNPATARGVDRLFARNERVVCVFEDEQSQPFVMVLVGATIVGSMATVWHGVVNPPRRPAVEKWDYRGQDIRLAKGE
EMGRFLLGSTVVLLYPAGPLKFNPQWQAASPVRMGEAMAS

Sequences:

>Translated_280_residues
MSERLFVLSQHILPKLALTRLAGRFADWKGGGITTAAIRRFIARYNVDMGEAADSDPAAYATFNDFFTRALKPGVRPVAD
ARLVCPVDGAVSQLGAIDSGRIFQAKGRDYSATALLAGDADLAARFADGHFATIYLSPRDYHRIHMPCAGRLLEMTYVPG
DLYSVNPATARGVDRLFARNERVVCVFEDEQSQPFVMVLVGATIVGSMATVWHGVVNPPRRPAVEKWDYRGQDIRLAKGE
EMGRFLLGSTVVLLYPAGPLKFNPQWQAASPVRMGEAMAS
>Mature_279_residues
SERLFVLSQHILPKLALTRLAGRFADWKGGGITTAAIRRFIARYNVDMGEAADSDPAAYATFNDFFTRALKPGVRPVADA
RLVCPVDGAVSQLGAIDSGRIFQAKGRDYSATALLAGDADLAARFADGHFATIYLSPRDYHRIHMPCAGRLLEMTYVPGD
LYSVNPATARGVDRLFARNERVVCVFEDEQSQPFVMVLVGATIVGSMATVWHGVVNPPRRPAVEKWDYRGQDIRLAKGEE
MGRFLLGSTVVLLYPAGPLKFNPQWQAASPVRMGEAMAS

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=268, Percent_Identity=33.5820895522388, Blast_Score=125, Evalue=4e-29,
Organism=Escherichia coli, GI1790604, Length=281, Percent_Identity=51.2455516014235, Blast_Score=272, Evalue=1e-74,
Organism=Caenorhabditis elegans, GI71980843, Length=245, Percent_Identity=34.2857142857143, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71980840, Length=245, Percent_Identity=34.2857142857143, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6321609, Length=243, Percent_Identity=29.2181069958848, Blast_Score=97, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24649526, Length=298, Percent_Identity=29.8657718120805, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24649528, Length=298, Percent_Identity=29.8657718120805, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24649524, Length=298, Percent_Identity=29.8657718120805, Blast_Score=103, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_CHRVO (Q7P0H6)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_900261.1
- GeneID:   2547710
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_0591
- NMPDR:   fig|243365.1.peg.591
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- PhylomeDB:   Q7P0H6
- ProtClustDB:   PRK00044
- BioCyc:   CVIO243365:CV_0591-MONOMER
- BRENDA:   4.1.1.65
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 30636; Mature: 30504

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERLFVLSQHILPKLALTRLAGRFADWKGGGITTAAIRRFIARYNVDMGEAADSDPAAY
CCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCEE
ATFNDFFTRALKPGVRPVADARLVCPVDGAVSQLGAIDSGRIFQAKGRDYSATALLAGDA
EHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCCEEEECCCCCCEEEEEECCH
DLAARFADGHFATIYLSPRDYHRIHMPCAGRLLEMTYVPGDLYSVNPATARGVDRLFARN
HHHHEECCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEECCCHHHHHHHHHHHCC
ERVVCVFEDEQSQPFVMVLVGATIVGSMATVWHGVVNPPRRPAVEKWDYRGQDIRLAKGE
CCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCH
EMGRFLLGSTVVLLYPAGPLKFNPQWQAASPVRMGEAMAS
HHHHHHHCCEEEEEECCCCCEECCCCCCCCCCHHHHHHCC
>Mature Secondary Structure 
SERLFVLSQHILPKLALTRLAGRFADWKGGGITTAAIRRFIARYNVDMGEAADSDPAAY
CCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCEE
ATFNDFFTRALKPGVRPVADARLVCPVDGAVSQLGAIDSGRIFQAKGRDYSATALLAGDA
EHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCCEEEECCCCCCEEEEEECCH
DLAARFADGHFATIYLSPRDYHRIHMPCAGRLLEMTYVPGDLYSVNPATARGVDRLFARN
HHHHEECCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEECCCHHHHHHHHHHHCC
ERVVCVFEDEQSQPFVMVLVGATIVGSMATVWHGVVNPPRRPAVEKWDYRGQDIRLAKGE
CCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCH
EMGRFLLGSTVVLLYPAGPLKFNPQWQAASPVRMGEAMAS
HHHHHHHCCEEEEEECCCCCEECCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14500782