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The map label for this gene is fecI [C]

Identifier: 34496040

GI number: 34496040

Start: 622916

End: 623482

Strand: Reverse

Name: fecI [C]

Synonym: CV_0585

Alternate gene names: 34496040

Gene position: 623482-622916 (Counterclockwise)

Preceding gene: 34496046

Following gene: 34496039

Centisome position: 13.12

GC content: 63.14

Gene sequence:

>567_bases
ATGGCAAGCCGCAAGGAAATGGCCGACTTCCTCGAGTCGGTGGAGAAGCGCGCCTTCAAGCAGGCGCTGTACGCGGTGCG
GCAGGAAGACAATGCGCTCGACATCGTGCAAGACTCGATGATGAAGCTGGCCGACCGCTACGCGCACGCGCCCGCGCACG
AGCTGCCGCTGATTTTCCAGCGCATCCTGCAAAACACCATCCGCGATCATTATCGCCGCAGCAAGGTGCGCAGCTTCGTC
AGCACCCTGCTGTCGTCGCTGATTCCCACCCACGCCGAGGACGACTCCCTCGATCCGCTCGAAACCCTGGACGTCGCAGC
CGACGAGGCGCACACCAACCCGGAACAGTGGTACCAGCGCAAGGAAGTGGCGCAGATGATAGACGCGTCGCTGCAGCTCC
TGCCCGCCCGTCAACGCGAGGCCTTCCTGCTGCGTTACTGGGAGGGACTGGATGTTGCCGAAACCGCTCTGGTCATGGGT
TGCTCCGAGGGCAGCGTGAAGACGCACTGCTCGCGGGCCAACCACACCCTGGCGGCCATTCTTGCGCAGAAGGGAGTATT
GCTATGA

Upstream 100 bases:

>100_bases
ATGCCGCTAAGCCACGGTTATTTCAGAAGAAAAACTGCCACTAGCCTAGTGAATCATGCTCTGCTAACATCTTTGGTTGG
CATCAACCTGAAATGCACAG

Downstream 100 bases:

>100_bases
AACACGCCAACGACGGGCAGGGAGAGCATTTGCCCGTCCACATCGCCCGCATCCTGGACAATCCCCACTCCGACCCGAGC
GCCCGCCAGATGGCCCGCCT

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; Sigma-; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MASRKEMADFLESVEKRAFKQALYAVRQEDNALDIVQDSMMKLADRYAHAPAHELPLIFQRILQNTIRDHYRRSKVRSFV
STLLSSLIPTHAEDDSLDPLETLDVAADEAHTNPEQWYQRKEVAQMIDASLQLLPARQREAFLLRYWEGLDVAETALVMG
CSEGSVKTHCSRANHTLAAILAQKGVLL

Sequences:

>Translated_188_residues
MASRKEMADFLESVEKRAFKQALYAVRQEDNALDIVQDSMMKLADRYAHAPAHELPLIFQRILQNTIRDHYRRSKVRSFV
STLLSSLIPTHAEDDSLDPLETLDVAADEAHTNPEQWYQRKEVAQMIDASLQLLPARQREAFLLRYWEGLDVAETALVMG
CSEGSVKTHCSRANHTLAAILAQKGVLL
>Mature_187_residues
ASRKEMADFLESVEKRAFKQALYAVRQEDNALDIVQDSMMKLADRYAHAPAHELPLIFQRILQNTIRDHYRRSKVRSFVS
TLLSSLIPTHAEDDSLDPLETLDVAADEAHTNPEQWYQRKEVAQMIDASLQLLPARQREAFLLRYWEGLDVAETALVMGC
SEGSVKTHCSRANHTLAAILAQKGVLL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21334; Mature: 21202

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASRKEMADFLESVEKRAFKQALYAVRQEDNALDIVQDSMMKLADRYAHAPAHELPLIFQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RILQNTIRDHYRRSKVRSFVSTLLSSLIPTHAEDDSLDPLETLDVAADEAHTNPEQWYQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
KEVAQMIDASLQLLPARQREAFLLRYWEGLDVAETALVMGCSEGSVKTHCSRANHTLAAI
HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LAQKGVLL
HHHCCCCC
>Mature Secondary Structure 
ASRKEMADFLESVEKRAFKQALYAVRQEDNALDIVQDSMMKLADRYAHAPAHELPLIFQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RILQNTIRDHYRRSKVRSFVSTLLSSLIPTHAEDDSLDPLETLDVAADEAHTNPEQWYQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
KEVAQMIDASLQLLPARQREAFLLRYWEGLDVAETALVMGCSEGSVKTHCSRANHTLAAI
HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LAQKGVLL
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA