Click here to switch to the map view.

The map label for this gene is aer [H]

Identifier: 34495851

GI number: 34495851

Start: 412691

End: 413251

Strand: Reverse

Name: aer [H]

Synonym: CV_0396

Alternate gene names: 34495851

Gene position: 413251-412691 (Counterclockwise)

Preceding gene: 34495852

Following gene: 34495850

Centisome position: 8.7

GC content: 65.6

Gene sequence:

>561_bases
ATGGAACAGACCGCAACAGGCCGCGGCGGCGGACGCGAAGTGCAGCTGGCGCCGCACGAACTGATCGTCACCAAGACCGA
CCCCACCGGCCACATCACTTACGCCAACCGCGTGTTCATGCGCATCGCCGGCTACGCCGAACACCAGCTGCTGGGCCAGC
CCCACAAGCTGATCCGCCACCCGGACATGCCGCGCGGCGCCTATCGCCTGATGTGGCAGACGCTGCAGGCCGGCCACGAA
TTCTTCGCGCTGGTAAAGAACGCCACCATAGACGGCAACTACTACTGGGTGCTGGCCAACGTCACCCCTGACTATGACCT
CAAGGGCAAGCTGCAGGGCTATTACTCGGTGCGACGGCCGCCCAGCCGCGCCGCCATCGCCGCCATCGAGCCCATCTACG
CCGAGATGCGCAAGATCGAGGCCGCCCACGGCAAGGCCGCCGCGCCCGACGCTTCGCGCGACTGGCTGCTGGCGCTGCTG
GAAGAAAAAGGCTGCAGCTACCAGGACTTCATCCTGGAGCTGAACGCCGACGTGCTGAAAGCCAAAGGAGTCGCCGGATG
A

Upstream 100 bases:

>100_bases
AATAGCGACCACATGCAAGCCTTGCTGCGCGATGCGCATAGCATGACAATGGCGGATTGGCAGCCATACTACAAATAGCA
AGGTCATAGAGAAGCAAACC

Downstream 100 bases:

>100_bases
GTTCGCCGCGCAAACCCACCCCCTTCCTGCGCTCCCACCTGGCCTGGGTGCTGGGCGCCTTCAACCTGCTGGTGCTGCTG
TCGATCCTCGACGACTACCT

Product: aerotaxis receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MEQTATGRGGGREVQLAPHELIVTKTDPTGHITYANRVFMRIAGYAEHQLLGQPHKLIRHPDMPRGAYRLMWQTLQAGHE
FFALVKNATIDGNYYWVLANVTPDYDLKGKLQGYYSVRRPPSRAAIAAIEPIYAEMRKIEAAHGKAAAPDASRDWLLALL
EEKGCSYQDFILELNADVLKAKGVAG

Sequences:

>Translated_186_residues
MEQTATGRGGGREVQLAPHELIVTKTDPTGHITYANRVFMRIAGYAEHQLLGQPHKLIRHPDMPRGAYRLMWQTLQAGHE
FFALVKNATIDGNYYWVLANVTPDYDLKGKLQGYYSVRRPPSRAAIAAIEPIYAEMRKIEAAHGKAAAPDASRDWLLALL
EEKGCSYQDFILELNADVLKAKGVAG
>Mature_186_residues
MEQTATGRGGGREVQLAPHELIVTKTDPTGHITYANRVFMRIAGYAEHQLLGQPHKLIRHPDMPRGAYRLMWQTLQAGHE
FFALVKNATIDGNYYWVLANVTPDYDLKGKLQGYYSVRRPPSRAAIAAIEPIYAEMRKIEAAHGKAAAPDASRDWLLALL
EEKGCSYQDFILELNADVLKAKGVAG

Specific function: Signal transducer for aerotaxis. The aerotactic response is the accumulation of cells around air bubbles. The nature of the sensory stimulus detected by this protein is the proton motive force or cellular redox state. It uses a FAD prosthetic group as a r

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=118, Percent_Identity=42.3728813559322, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF08447 PAS_3 [H]

EC number: NA

Molecular weight: Translated: 20704; Mature: 20704

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQTATGRGGGREVQLAPHELIVTKTDPTGHITYANRVFMRIAGYAEHQLLGQPHKLIRH
CCCCCCCCCCCEEEEECCCEEEEECCCCCCEEEHHHHEEHHHHCCHHHHHCCCCHHHHCC
PDMPRGAYRLMWQTLQAGHEFFALVKNATIDGNYYWVLANVTPDYDLKGKLQGYYSVRRP
CCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCEEEEEEECCCCCCCCCCCCEEEEECCC
PSRAAIAAIEPIYAEMRKIEAAHGKAAAPDASRDWLLALLEEKGCSYQDFILELNADVLK
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHEECCCHHHC
AKGVAG
CCCCCC
>Mature Secondary Structure
MEQTATGRGGGREVQLAPHELIVTKTDPTGHITYANRVFMRIAGYAEHQLLGQPHKLIRH
CCCCCCCCCCCEEEEECCCEEEEECCCCCCEEEHHHHEEHHHHCCHHHHHCCCCHHHHCC
PDMPRGAYRLMWQTLQAGHEFFALVKNATIDGNYYWVLANVTPDYDLKGKLQGYYSVRRP
CCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCEEEEEEECCCCCCCCCCCCEEEEECCC
PSRAAIAAIEPIYAEMRKIEAAHGKAAAPDASRDWLLALLEEKGCSYQDFILELNADVLK
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHEECCCHHHC
AKGVAG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 9190831; 9380671 [H]