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The map label for this gene is ypdA [H]

Identifier: 161594053

GI number: 161594053

Start: 1926134

End: 1927804

Strand: Reverse

Name: ypdA [H]

Synonym: CV_1771

Alternate gene names: 161594053

Gene position: 1927804-1926134 (Counterclockwise)

Preceding gene: 34497227

Following gene: 34497225

Centisome position: 40.58

GC content: 65.11

Gene sequence:

>1671_bases
ATGATAGAAAACAACCCGAATATGTTGCTGCTGGCGGTGTTCGAGCGCGCCGCGCTGATGCTGATGGCGCTGTTCTTTCT
GACCCGCGTCCGTCCGTTCCAGGATTTGCTGCGCCAGCAGAAGCACAGCCCGGCGGAGCTGGCCGGCGTCTCGCTGCTGT
TCTGCCTGTTCGCCGTGTTCAGCACCTATACCGGCATTCCGGTGGACGGCTCGCTGGTCAATGTCCGCACCATCGCCATC
CTGGCCGGCGGCATATTGTTCGGCCCCTGGGTGGGCATTCCGGCCGGCGTCGTCTCCGGCCTGCACCGCTACCTGATCGA
CATCCACGGCTACACCTCGCTGGCCTGCCTGATCTCCAGCATCTGCGCCGGCTTGCTCGCCACCGCCATCCACTACCGCG
CCGGCCGCCAGCGCTTGTGGCTGTACGGCATCGCCGCCGGCGTCGCCTGCGAGAGCCTGACCATGGCGCTGATCCTGTGG
TTCACCCAGCCGGCGGTCGGCCAGGCCATCGTCGGCCACATCGCCTATCCGATGATCACCGGCACGGTCTGCATCGGCCT
CATCATCAAGCTGGTGCAGGATCTGGACGACGAGAAGGAACTGTTGGCGGCCCGCCAGGCCAAGCTGGCGCTGACCATCG
CCAACCGCACCCTGCCCTATTTCCAGAACGTGGACCGCGACGCGCTGGTGGAAGTGTGCACCGTGATCCGCAACCACATC
GGCGCCGACGCGGTGGCCATCACCGATACCCGCGACGTGCTGGCCTACGTGGGGCTGGGCAAGGACTACTACGAACCGGC
CGCCCACTCCGCCATCGGCGAGATCACCCGCCGCGCGGTGGAGCAGGACCAGATCATCATCGAGAACGACCTGCGCCAGT
ACCGGGTGGCGGACTTCCACTCGGTGATCATCATTCCGCTGCGCGAAAACGGCCGCGTCACCGGCACGCTGAAGATCTTC
TTCCGCCAGAGCGGCGGCATCACCGGCTCGCTGCGCGAGCTGGGGCTGGGCCTGTCGCAGCTGATCTCCACCCAGATGGA
GGCGTCGCGCATCAAGCAGCTGCAGGAGATGGCGCGCAAGGCCGAGTTCGCCGCGCTGCAGAGCAAGATCAACCCGCACT
TCCTGTTCAACGCGTTGAACGCCATCTCGTCCTTGATCCGCATCCAGCCGTCGGAGGCGCGGCAGCTGATCGCCAAGCTG
GCCGACTACCTGCGCTACAACCTGTCGCTGGGCGACACCCTGATCGACATCCAGGAAGAACTGAAGCAGGTGCGCGACTA
CGTGGCCATAGAGCAGGCACGCTTCGGCAGCAAGCTGTCCGTCGCATTCGATATCGACGAAGTCCACGCCCGCGTGCCCA
GCCTGCTGCTGCAGCCCTTGGTGGAAAACGCGATACTGCACGGCATCCAGCCGCGCAAGGAGGCGGGCGAGGTGCGCATC
GCGGTGAAGAAGCTGGACGACCGCATCCGGGTATCCGTGCGCGACACCGGCTACGGCATCAGCCAGGAAGTGATGGACGG
CATCGCCGAGGGCAAGGTGGAGAGCCGCAGCATCGGCCTGTCCAACGTCAACGAGCGCATCAAGCTCTTGTACGGCGAGG
GCCTGCGGCTTACCCGGCTGGAGCCGGGCACCGAAGTCAGTTTCGAATTGCCGCTGGAGGAAAAAGCATGA

Upstream 100 bases:

>100_bases
TATTGCCCGCCAGGCTGCTCCATCCGTCCTCATGCCTTAAAATACTGGCAACCATTCCGTTTTCACCGATTTCCCGGCCG
CCGCCGCGGCTCAATTCCCG

Downstream 100 bases:

>100_bases
TGAAGGCGCTGATCGTCGAGGACGAATACCTGGCGCGCGAAGAGCTCGCCTACCTGATCCGCGAGCACAGCGCCATCGAG
ATCGCCGCCAGCGTCGAGGA

Product: sensor kinase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 556; Mature: 556

Protein sequence:

>556_residues
MIENNPNMLLLAVFERAALMLMALFFLTRVRPFQDLLRQQKHSPAELAGVSLLFCLFAVFSTYTGIPVDGSLVNVRTIAI
LAGGILFGPWVGIPAGVVSGLHRYLIDIHGYTSLACLISSICAGLLATAIHYRAGRQRLWLYGIAAGVACESLTMALILW
FTQPAVGQAIVGHIAYPMITGTVCIGLIIKLVQDLDDEKELLAARQAKLALTIANRTLPYFQNVDRDALVEVCTVIRNHI
GADAVAITDTRDVLAYVGLGKDYYEPAAHSAIGEITRRAVEQDQIIIENDLRQYRVADFHSVIIIPLRENGRVTGTLKIF
FRQSGGITGSLRELGLGLSQLISTQMEASRIKQLQEMARKAEFAALQSKINPHFLFNALNAISSLIRIQPSEARQLIAKL
ADYLRYNLSLGDTLIDIQEELKQVRDYVAIEQARFGSKLSVAFDIDEVHARVPSLLLQPLVENAILHGIQPRKEAGEVRI
AVKKLDDRIRVSVRDTGYGISQEVMDGIAEGKVESRSIGLSNVNERIKLLYGEGLRLTRLEPGTEVSFELPLEEKA

Sequences:

>Translated_556_residues
MIENNPNMLLLAVFERAALMLMALFFLTRVRPFQDLLRQQKHSPAELAGVSLLFCLFAVFSTYTGIPVDGSLVNVRTIAI
LAGGILFGPWVGIPAGVVSGLHRYLIDIHGYTSLACLISSICAGLLATAIHYRAGRQRLWLYGIAAGVACESLTMALILW
FTQPAVGQAIVGHIAYPMITGTVCIGLIIKLVQDLDDEKELLAARQAKLALTIANRTLPYFQNVDRDALVEVCTVIRNHI
GADAVAITDTRDVLAYVGLGKDYYEPAAHSAIGEITRRAVEQDQIIIENDLRQYRVADFHSVIIIPLRENGRVTGTLKIF
FRQSGGITGSLRELGLGLSQLISTQMEASRIKQLQEMARKAEFAALQSKINPHFLFNALNAISSLIRIQPSEARQLIAKL
ADYLRYNLSLGDTLIDIQEELKQVRDYVAIEQARFGSKLSVAFDIDEVHARVPSLLLQPLVENAILHGIQPRKEAGEVRI
AVKKLDDRIRVSVRDTGYGISQEVMDGIAEGKVESRSIGLSNVNERIKLLYGEGLRLTRLEPGTEVSFELPLEEKA
>Mature_556_residues
MIENNPNMLLLAVFERAALMLMALFFLTRVRPFQDLLRQQKHSPAELAGVSLLFCLFAVFSTYTGIPVDGSLVNVRTIAI
LAGGILFGPWVGIPAGVVSGLHRYLIDIHGYTSLACLISSICAGLLATAIHYRAGRQRLWLYGIAAGVACESLTMALILW
FTQPAVGQAIVGHIAYPMITGTVCIGLIIKLVQDLDDEKELLAARQAKLALTIANRTLPYFQNVDRDALVEVCTVIRNHI
GADAVAITDTRDVLAYVGLGKDYYEPAAHSAIGEITRRAVEQDQIIIENDLRQYRVADFHSVIIIPLRENGRVTGTLKIF
FRQSGGITGSLRELGLGLSQLISTQMEASRIKQLQEMARKAEFAALQSKINPHFLFNALNAISSLIRIQPSEARQLIAKL
ADYLRYNLSLGDTLIDIQEELKQVRDYVAIEQARFGSKLSVAFDIDEVHARVPSLLLQPLVENAILHGIQPRKEAGEVRI
AVKKLDDRIRVSVRDTGYGISQEVMDGIAEGKVESRSIGLSNVNERIKLLYGEGLRLTRLEPGTEVSFELPLEEKA

Specific function: Unknown

COG id: COG3275

COG function: function code T; Putative regulator of cell autolysis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=546, Percent_Identity=56.4102564102564, Blast_Score=612, Evalue=1e-176,
Organism=Escherichia coli, GI1788446, Length=569, Percent_Identity=29.701230228471, Blast_Score=206, Evalue=4e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: 2.7.3.-

Molecular weight: Translated: 61332; Mature: 61332

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENNPNMLLLAVFERAALMLMALFFLTRVRPFQDLLRQQKHSPAELAGVSLLFCLFAVF
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
STYTGIPVDGSLVNVRTIAILAGGILFGPWVGIPAGVVSGLHRYLIDIHGYTSLACLISS
HHCCCCCCCCCEEHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
ICAGLLATAIHYRAGRQRLWLYGIAAGVACESLTMALILWFTQPAVGQAIVGHIAYPMIT
HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
GTVCIGLIIKLVQDLDDEKELLAARQAKLALTIANRTLPYFQNVDRDALVEVCTVIRNHI
HHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHC
GADAVAITDTRDVLAYVGLGKDYYEPAAHSAIGEITRRAVEQDQIIIENDLRQYRVADFH
CCCEEEEECHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCC
SVIIIPLRENGRVTGTLKIFFRQSGGITGSLRELGLGLSQLISTQMEASRIKQLQEMARK
EEEEEEECCCCEEEEEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AEFAALQSKINPHFLFNALNAISSLIRIQPSEARQLIAKLADYLRYNLSLGDTLIDIQEE
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LKQVRDYVAIEQARFGSKLSVAFDIDEVHARVPSLLLQPLVENAILHGIQPRKEAGEVRI
HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
AVKKLDDRIRVSVRDTGYGISQEVMDGIAEGKVESRSIGLSNVNERIKLLYGEGLRLTRL
EHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHCCCHHHHHHHHEEEECCCEEEEEE
EPGTEVSFELPLEEKA
CCCCCEEEECCCCCCC
>Mature Secondary Structure
MIENNPNMLLLAVFERAALMLMALFFLTRVRPFQDLLRQQKHSPAELAGVSLLFCLFAVF
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
STYTGIPVDGSLVNVRTIAILAGGILFGPWVGIPAGVVSGLHRYLIDIHGYTSLACLISS
HHCCCCCCCCCEEHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
ICAGLLATAIHYRAGRQRLWLYGIAAGVACESLTMALILWFTQPAVGQAIVGHIAYPMIT
HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
GTVCIGLIIKLVQDLDDEKELLAARQAKLALTIANRTLPYFQNVDRDALVEVCTVIRNHI
HHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHC
GADAVAITDTRDVLAYVGLGKDYYEPAAHSAIGEITRRAVEQDQIIIENDLRQYRVADFH
CCCEEEEECHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCC
SVIIIPLRENGRVTGTLKIFFRQSGGITGSLRELGLGLSQLISTQMEASRIKQLQEMARK
EEEEEEECCCCEEEEEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AEFAALQSKINPHFLFNALNAISSLIRIQPSEARQLIAKLADYLRYNLSLGDTLIDIQEE
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LKQVRDYVAIEQARFGSKLSVAFDIDEVHARVPSLLLQPLVENAILHGIQPRKEAGEVRI
HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
AVKKLDDRIRVSVRDTGYGISQEVMDGIAEGKVESRSIGLSNVNERIKLLYGEGLRLTRL
EHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHCCCHHHHHHHHEEEECCCEEEEEE
EPGTEVSFELPLEEKA
CCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]