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The map label for this gene is ypdB [H]

Identifier: 34497225

GI number: 34497225

Start: 1925388

End: 1926134

Strand: Reverse

Name: ypdB [H]

Synonym: CV_1770

Alternate gene names: 34497225

Gene position: 1926134-1925388 (Counterclockwise)

Preceding gene: 161594053

Following gene: 34497224

Centisome position: 40.54

GC content: 62.38

Gene sequence:

>747_bases
ATGAAGGCGCTGATCGTCGAGGACGAATACCTGGCGCGCGAAGAGCTCGCCTACCTGATCCGCGAGCACAGCGCCATCGA
GATCGCCGCCAGCGTCGAGGACGGGCTGGAAGCGTTCAAATTCCTGCAGGAAAACGACGTGGACGTGGTGTTCCTGGACA
TCAACATCCCGTCGATAGACGGCCTGCTGCTGGCCAAGAATCTGCACAAGACCACGCGGCCGCCGCGCATCGTCTTCGTC
ACCGCCTACAAGGAGTTCGCGGTGGACGCCTTCGAGCTGGAAGCCTTCGACTACATTCTCAAGCCCTATAACGAAACCCG
CATCGCCAGCGTGCTGGCCAGGCTGGAAGCGCAGGAGCGGCCTGTTTCCGCGCCCGCAGCGCCGGCCGCGCCTCAGCCAG
CCGAAAGCGCGCCCGTCAGCCGCACGGTGAACCTGGCCAAGGGCGACAGCATCATCGTCACCCCCTGCGACGACATCTAT
TACGTCGAGGCGGACGAGAAAGTCACCCTGGTCTACACCGCGCGCGACCGCTACGTGATGGCGATGAGCATCAGCGAGTT
CGTGTCCCGCCTCCCAGCAGACAGCTTCTTCCGCTGCCACCGCTCCTTCTGCGTCAACATCCACAAGATCCGCGAAATCG
CGCCCTGGCAGAACAGCACCTACATCATCAAGCTGTACGACCTGAAGGCGGAAATCCCGGTCAGCCGCAGCAACATCAAG
GCGTTCAGGCAGCTGATGCACCTCTGA

Upstream 100 bases:

>100_bases
ACGAGCGCATCAAGCTCTTGTACGGCGAGGGCCTGCGGCTTACCCGGCTGGAGCCGGGCACCGAAGTCAGTTTCGAATTG
CCGCTGGAGGAAAAAGCATG

Downstream 100 bases:

>100_bases
TTGCAGCTCATTCCGCGCCGCCTGCATTTCATTCCCGCGCTGCGCCACCTCTATAAGCGCGGGCTTATAGTCATGCCAAC
AGTAATGACTTTAAGCGAGC

Product: two-component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKALIVEDEYLAREELAYLIREHSAIEIAASVEDGLEAFKFLQENDVDVVFLDINIPSIDGLLLAKNLHKTTRPPRIVFV
TAYKEFAVDAFELEAFDYILKPYNETRIASVLARLEAQERPVSAPAAPAAPQPAESAPVSRTVNLAKGDSIIVTPCDDIY
YVEADEKVTLVYTARDRYVMAMSISEFVSRLPADSFFRCHRSFCVNIHKIREIAPWQNSTYIIKLYDLKAEIPVSRSNIK
AFRQLMHL

Sequences:

>Translated_248_residues
MKALIVEDEYLAREELAYLIREHSAIEIAASVEDGLEAFKFLQENDVDVVFLDINIPSIDGLLLAKNLHKTTRPPRIVFV
TAYKEFAVDAFELEAFDYILKPYNETRIASVLARLEAQERPVSAPAAPAAPQPAESAPVSRTVNLAKGDSIIVTPCDDIY
YVEADEKVTLVYTARDRYVMAMSISEFVSRLPADSFFRCHRSFCVNIHKIREIAPWQNSTYIIKLYDLKAEIPVSRSNIK
AFRQLMHL
>Mature_248_residues
MKALIVEDEYLAREELAYLIREHSAIEIAASVEDGLEAFKFLQENDVDVVFLDINIPSIDGLLLAKNLHKTTRPPRIVFV
TAYKEFAVDAFELEAFDYILKPYNETRIASVLARLEAQERPVSAPAAPAAPQPAESAPVSRTVNLAKGDSIIVTPCDDIY
YVEADEKVTLVYTARDRYVMAMSISEFVSRLPADSFFRCHRSFCVNIHKIREIAPWQNSTYIIKLYDLKAEIPVSRSNIK
AFRQLMHL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=248, Percent_Identity=59.6774193548387, Blast_Score=313, Evalue=7e-87,
Organism=Escherichia coli, GI87082052, Length=251, Percent_Identity=33.0677290836653, Blast_Score=117, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28129; Mature: 28129

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALIVEDEYLAREELAYLIREHSAIEIAASVEDGLEAFKFLQENDVDVVFLDINIPSID
CCEEEECHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
GLLLAKNLHKTTRPPRIVFVTAYKEFAVDAFELEAFDYILKPYNETRIASVLARLEAQER
CEEEEHHHHHCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
PVSAPAAPAAPQPAESAPVSRTVNLAKGDSIIVTPCDDIYYVEADEKVTLVYTARDRYVM
CCCCCCCCCCCCCCCCCCCHHEEEEECCCEEEEEECCCEEEEECCCEEEEEEEECCCEEE
AMSISEFVSRLPADSFFRCHRSFCVNIHKIREIAPWQNSTYIIKLYDLKAEIPVSRSNIK
EEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHH
AFRQLMHL
HHHHHHCC
>Mature Secondary Structure
MKALIVEDEYLAREELAYLIREHSAIEIAASVEDGLEAFKFLQENDVDVVFLDINIPSID
CCEEEECHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
GLLLAKNLHKTTRPPRIVFVTAYKEFAVDAFELEAFDYILKPYNETRIASVLARLEAQER
CEEEEHHHHHCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
PVSAPAAPAAPQPAESAPVSRTVNLAKGDSIIVTPCDDIYYVEADEKVTLVYTARDRYVM
CCCCCCCCCCCCCCCCCCCHHEEEEECCCEEEEEECCCEEEEECCCEEEEEEEECCCEEE
AMSISEFVSRLPADSFFRCHRSFCVNIHKIREIAPWQNSTYIIKLYDLKAEIPVSRSNIK
EEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHH
AFRQLMHL
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]