| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is synA [H]
Identifier: 33864256
GI number: 33864256
Start: 2103943
End: 2106267
Strand: Reverse
Name: synA [H]
Synonym: PMT1991
Alternate gene names: 33864256
Gene position: 2106267-2103943 (Counterclockwise)
Preceding gene: 33864258
Following gene: 33864255
Centisome position: 87.37
GC content: 56.47
Gene sequence:
>2325_bases GTGAGCCGCAACGACCGTCCATTGGCTCATCCATCCGTCGCACTCGATATCGAGGGGATGAAATGCGGCGGCTGCGTTCA ATCGGTAGAGCGTATTTTGCTTGAGCAGCCCAGTGTTGCTCGTGCCAGTGTCAACTTGGTAGCCCGCACTGCGTGGCTGG ATCTCAACGATCCAGGCCAGTCTCTTGAGCCGATCCTTGCTGCTCTGGCAACCCGGGGTTTCTCTGCTCAGCCAAGAAAT ACGGGCTCATTAGAACAGCTAACGCCTTCAACGCGTGACTCCCTAGGGGCTTGGTGGAGTCAGTGGCGTCAGTTAATGGT GGCCTTGGTGTTGCTGTTGCTGTCTGTTCTTGGCCACCTTGCTGCCGGTGGACATCTTGAGCTGGTGATTGTAGGGGCCT TGCCCTTCCATGCCGGATTGGCCACGGTGGCTTTGTTGGGCCCTGGTCGGCCGATTCTTGTTGGCGGAGCGCGGGCGGCT CTTGCCTTAACCCCCACCATGGACACCTTGGTGGGATTGGGCGTTAGCAGTGCCTATCTGGCGAGCCTGGTTGCTTTGCT TTGGCCTCAGGTGGGTTGGCCTTGCTTCTTCAATGAACCCGTGATGTTGCTCGGCTTTGTTTTGTTGGGAAGGTTCCTTG AGGAGCGTGCTCGTTTCCGCACTGGGCGGGCCCTCCAACAGCTGGCTCAATTGCAGCCAGATACTGCCAGGTTGCTGGCA GGTGATGGGACTATCCGTGAGGTAAGAGTCGGTGCTCTCAGGCCTGGGGAGAGGGTTCAGTTGTTAGCAGGGGATCGCAT TCCTGTTGATGGCATGGTGCTGGAGGGACATTCCGCTGTCGACGTGTCATGCATTACTGGTGAGCCATTGCCGTTGGAGG CAGCTCCAGGAATCGAGCTGACTTCAGGCAGCCTCAATCTTGAAGCCACCTTGTTGCTAGAAGTGCGACATGTGGGAGCT GAGACAGCTCTGGCAAGAATCATTAGTTTGGTGGAACAGGCCCAGGCGCGTAAGGCTCCTATTCAAGGCCTGGCTGATCG GGTTGCAGGTCGCTTTTGCTATGGCGTTGTCAGCCTGGCACTGCTGACTTTTCTGTTTTGGTGGCAACTGGGTGCACGTC TTTGGCCAGAGGTGTTGCACGCTTCGGGTCAGGGGTTGGTGCATGGATATGGTCATCATGTCCCGCTTGGAGGCGTCGCT GAAACCTCCTTAGGATTGGCTTTACAGCTTGCCATCGCTGTTCTAGTCGTGGCCTGTCCCTGTGCATTGGGATTGGCAAC GCCCACAGTGATCACAGTGGCCTCTGGTCAGGCGGCCCGCCGGGGGTGGTTATTTCGCGGTGGGGATGTGATTGAAATGG CAGCCTCGCTGAGGCAAGTTGTCTTCGACAAAACTGGCACTCTTACCCTTGGCCGCCCTTTGGTGGCAGGGGTTGTTGGC ACAAAAAAACCTGATCAATTGTTGCAGCTAGCTGCAAGTCTTGAGCAAAACAGTCGCCATCCCTTGGCCCATGCTGTTTT GCAAGAGGCTCAACGGCATCGGCTTTCGCTTCTGTCCACTTTGGCAACCCGTACCTATCCAGGCTCCGGCCTGGCCGGTG AGCTTGAAGGTGTAGAAGGAACGGTTCGAGTAGGTACACCGGAATGGCTTCAGGCTGAAGGGGTTCATTGGACAGCTGAA CTTCAGGCTGATGTTGAGCTGTCGTCTCTTCAGGGGCAATCGGTGGTAGCCGTGGCTCTGGGGGAAGAGCCTTTGGGCCT TGTGGCCATTGATGATCGGCTTCGACCTGATGTGTCTGTTGCTTTGGATCGATTACGAGAGCAGGGGATGACTCTGGCCA TGCTTAGTGGTGATAGACGTCAGGCGGTGGAACGCCTGGGGCAGCAGTTGGGTTTTCAACCCCATCAACTGGGCTGGCAG TTGTTGCCTGATCAGAAGCTGGAGCGCTTGCAACGTCTTCGCAAGGCTGGACTGTTGGCAATGGTTGGCGATGGCATTAA TGATGCCCCAGCTCTGGCGGCAGCAGATCTTGGTATCGCTGTGGGTACCGGCACGCAGATAGCCCAGGATTCTGCTGATC TGGTGTTGCTTGGGGATCGCCTGGAGGGTTTGCCGGAAGCCCTTTTGTTGGCTCGCCGCACCATGGCAAAAGTGCGTCAA AACCTGACTTGGGCCTTTGGCTACAACCTCATTGCTTTGCCAATTGCTGCAGGATTGTTGTTGCCGGGCTTTGGGTTATT GCTCTCCCCACCCATCGCAGCTCTATTGATGGCCCTTAGTTCAATCACGGTGGTCGTGAACGCTTTGGCACTGCGTACTA CATGA
Upstream 100 bases:
>100_bases AAAGACTGTTTTGAGTCTCTGGTGAGATCTTTGGGCTGCTGTTATGGGATGGGCTATGCGTAACGATTGTCATTAGCGTG CGGGAACATTTCACCGATCT
Downstream 100 bases:
>100_bases GTGGTCGCTTTCTTGTTCTGGAGGGTATTGACGGCTGTGGCAAGACCACTCAGCTTCGTCACCTTGCCAACTGGCTGCCA CGCAGCGGTTTGATGCCTGA
Product: P-type ATPase transporter for copper
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 774; Mature: 773
Protein sequence:
>774_residues MSRNDRPLAHPSVALDIEGMKCGGCVQSVERILLEQPSVARASVNLVARTAWLDLNDPGQSLEPILAALATRGFSAQPRN TGSLEQLTPSTRDSLGAWWSQWRQLMVALVLLLLSVLGHLAAGGHLELVIVGALPFHAGLATVALLGPGRPILVGGARAA LALTPTMDTLVGLGVSSAYLASLVALLWPQVGWPCFFNEPVMLLGFVLLGRFLEERARFRTGRALQQLAQLQPDTARLLA GDGTIREVRVGALRPGERVQLLAGDRIPVDGMVLEGHSAVDVSCITGEPLPLEAAPGIELTSGSLNLEATLLLEVRHVGA ETALARIISLVEQAQARKAPIQGLADRVAGRFCYGVVSLALLTFLFWWQLGARLWPEVLHASGQGLVHGYGHHVPLGGVA ETSLGLALQLAIAVLVVACPCALGLATPTVITVASGQAARRGWLFRGGDVIEMAASLRQVVFDKTGTLTLGRPLVAGVVG TKKPDQLLQLAASLEQNSRHPLAHAVLQEAQRHRLSLLSTLATRTYPGSGLAGELEGVEGTVRVGTPEWLQAEGVHWTAE LQADVELSSLQGQSVVAVALGEEPLGLVAIDDRLRPDVSVALDRLREQGMTLAMLSGDRRQAVERLGQQLGFQPHQLGWQ LLPDQKLERLQRLRKAGLLAMVGDGINDAPALAAADLGIAVGTGTQIAQDSADLVLLGDRLEGLPEALLLARRTMAKVRQ NLTWAFGYNLIALPIAAGLLLPGFGLLLSPPIAALLMALSSITVVVNALALRTT
Sequences:
>Translated_774_residues MSRNDRPLAHPSVALDIEGMKCGGCVQSVERILLEQPSVARASVNLVARTAWLDLNDPGQSLEPILAALATRGFSAQPRN TGSLEQLTPSTRDSLGAWWSQWRQLMVALVLLLLSVLGHLAAGGHLELVIVGALPFHAGLATVALLGPGRPILVGGARAA LALTPTMDTLVGLGVSSAYLASLVALLWPQVGWPCFFNEPVMLLGFVLLGRFLEERARFRTGRALQQLAQLQPDTARLLA GDGTIREVRVGALRPGERVQLLAGDRIPVDGMVLEGHSAVDVSCITGEPLPLEAAPGIELTSGSLNLEATLLLEVRHVGA ETALARIISLVEQAQARKAPIQGLADRVAGRFCYGVVSLALLTFLFWWQLGARLWPEVLHASGQGLVHGYGHHVPLGGVA ETSLGLALQLAIAVLVVACPCALGLATPTVITVASGQAARRGWLFRGGDVIEMAASLRQVVFDKTGTLTLGRPLVAGVVG TKKPDQLLQLAASLEQNSRHPLAHAVLQEAQRHRLSLLSTLATRTYPGSGLAGELEGVEGTVRVGTPEWLQAEGVHWTAE LQADVELSSLQGQSVVAVALGEEPLGLVAIDDRLRPDVSVALDRLREQGMTLAMLSGDRRQAVERLGQQLGFQPHQLGWQ LLPDQKLERLQRLRKAGLLAMVGDGINDAPALAAADLGIAVGTGTQIAQDSADLVLLGDRLEGLPEALLLARRTMAKVRQ NLTWAFGYNLIALPIAAGLLLPGFGLLLSPPIAALLMALSSITVVVNALALRTT >Mature_773_residues SRNDRPLAHPSVALDIEGMKCGGCVQSVERILLEQPSVARASVNLVARTAWLDLNDPGQSLEPILAALATRGFSAQPRNT GSLEQLTPSTRDSLGAWWSQWRQLMVALVLLLLSVLGHLAAGGHLELVIVGALPFHAGLATVALLGPGRPILVGGARAAL ALTPTMDTLVGLGVSSAYLASLVALLWPQVGWPCFFNEPVMLLGFVLLGRFLEERARFRTGRALQQLAQLQPDTARLLAG DGTIREVRVGALRPGERVQLLAGDRIPVDGMVLEGHSAVDVSCITGEPLPLEAAPGIELTSGSLNLEATLLLEVRHVGAE TALARIISLVEQAQARKAPIQGLADRVAGRFCYGVVSLALLTFLFWWQLGARLWPEVLHASGQGLVHGYGHHVPLGGVAE TSLGLALQLAIAVLVVACPCALGLATPTVITVASGQAARRGWLFRGGDVIEMAASLRQVVFDKTGTLTLGRPLVAGVVGT KKPDQLLQLAASLEQNSRHPLAHAVLQEAQRHRLSLLSTLATRTYPGSGLAGELEGVEGTVRVGTPEWLQAEGVHWTAEL QADVELSSLQGQSVVAVALGEEPLGLVAIDDRLRPDVSVALDRLREQGMTLAMLSGDRRQAVERLGQQLGFQPHQLGWQL LPDQKLERLQRLRKAGLLAMVGDGINDAPALAAADLGIAVGTGTQIAQDSADLVLLGDRLEGLPEALLLARRTMAKVRQN LTWAFGYNLIALPIAAGLLLPGFGLLLSPPIAALLMALSSITVVVNALALRTT
Specific function: Involved in copper transport [H]
COG id: COG2217
COG function: function code P; Cation transport ATPase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HMA domain [H]
Homologues:
Organism=Homo sapiens, GI115529486, Length=837, Percent_Identity=29.5101553166069, Blast_Score=369, Evalue=1e-102, Organism=Homo sapiens, GI55743071, Length=808, Percent_Identity=31.5594059405941, Blast_Score=368, Evalue=1e-101, Organism=Homo sapiens, GI55743073, Length=577, Percent_Identity=31.1958405545927, Blast_Score=278, Evalue=1e-74, Organism=Homo sapiens, GI48762685, Length=205, Percent_Identity=27.8048780487805, Blast_Score=73, Evalue=1e-12, Organism=Homo sapiens, GI118498343, Length=207, Percent_Identity=28.0193236714976, Blast_Score=73, Evalue=1e-12, Organism=Homo sapiens, GI48762689, Length=205, Percent_Identity=27.8048780487805, Blast_Score=73, Evalue=1e-12, Organism=Homo sapiens, GI48762687, Length=205, Percent_Identity=27.8048780487805, Blast_Score=73, Evalue=1e-12, Organism=Homo sapiens, GI48762691, Length=205, Percent_Identity=27.8048780487805, Blast_Score=72, Evalue=1e-12, Organism=Escherichia coli, GI1786691, Length=774, Percent_Identity=35.0129198966408, Blast_Score=363, Evalue=1e-101, Organism=Escherichia coli, GI1789879, Length=765, Percent_Identity=31.8954248366013, Blast_Score=264, Evalue=2e-71, Organism=Escherichia coli, GI1786914, Length=541, Percent_Identity=27.3567467652495, Blast_Score=127, Evalue=4e-30, Organism=Escherichia coli, GI2367363, Length=625, Percent_Identity=24, Blast_Score=89, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17556548, Length=668, Percent_Identity=32.0359281437126, Blast_Score=295, Evalue=6e-80, Organism=Caenorhabditis elegans, GI17531459, Length=168, Percent_Identity=30.3571428571429, Blast_Score=68, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71997275, Length=187, Percent_Identity=24.5989304812834, Blast_Score=67, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71997262, Length=187, Percent_Identity=24.5989304812834, Blast_Score=67, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6320475, Length=630, Percent_Identity=31.7460317460317, Blast_Score=309, Evalue=9e-85, Organism=Saccharomyces cerevisiae, GI6319772, Length=624, Percent_Identity=29.8076923076923, Blast_Score=278, Evalue=2e-75, Organism=Saccharomyces cerevisiae, GI6325221, Length=581, Percent_Identity=25.473321858864, Blast_Score=103, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6321430, Length=581, Percent_Identity=24.7848537005164, Blast_Score=98, Evalue=5e-21, Organism=Saccharomyces cerevisiae, GI6321271, Length=181, Percent_Identity=27.6243093922652, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI221329854, Length=581, Percent_Identity=32.7022375215146, Blast_Score=229, Evalue=4e-60, Organism=Drosophila melanogaster, GI24668696, Length=604, Percent_Identity=21.3576158940397, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI281366617, Length=604, Percent_Identity=21.3576158940397, Blast_Score=88, Evalue=3e-17, Organism=Drosophila melanogaster, GI24668708, Length=604, Percent_Identity=21.3576158940397, Blast_Score=88, Evalue=3e-17, Organism=Drosophila melanogaster, GI161085803, Length=604, Percent_Identity=21.3576158940397, Blast_Score=88, Evalue=3e-17, Organism=Drosophila melanogaster, GI24668704, Length=604, Percent_Identity=21.3576158940397, Blast_Score=88, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008250 - InterPro: IPR006403 - InterPro: IPR006416 - InterPro: IPR001757 - InterPro: IPR018303 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR017969 - InterPro: IPR006121 - InterPro: IPR000150 [H]
Pfam domain/function: PF00122 E1-E2_ATPase; PF00403 HMA; PF00702 Hydrolase [H]
EC number: =3.6.3.4 [H]
Molecular weight: Translated: 81913; Mature: 81781
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS00154 ATPASE_E1_E2 ; PS01047 HMA_1 ; PS50846 HMA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRNDRPLAHPSVALDIEGMKCGGCVQSVERILLEQPSVARASVNLVARTAWLDLNDPGQ CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHEEEEEEEECCCCCC SLEPILAALATRGFSAQPRNTGSLEQLTPSTRDSLGAWWSQWRQLMVALVLLLLSVLGHL HHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAGGHLELVIVGALPFHAGLATVALLGPGRPILVGGARAALALTPTMDTLVGLGVSSAYL CCCCCEEEEEEECCCHHHHHHHHEEECCCCEEEEECCCEEEEECCCHHHHHHCCCHHHHH ASLVALLWPQVGWPCFFNEPVMLLGFVLLGRFLEERARFRTGRALQQLAQLQPDTARLLA HHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEE GDGTIREVRVGALRPGERVQLLAGDRIPVDGMVLEGHSAVDVSCITGEPLPLEAAPGIEL CCCCEEEEEECCCCCCCCEEEEECCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEE TSGSLNLEATLLLEVRHVGAETALARIISLVEQAQARKAPIQGLADRVAGRFCYGVVSLA ECCCCCEEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LLTFLFWWQLGARLWPEVLHASGQGLVHGYGHHVPLGGVAETSLGLALQLAIAVLVVACP HHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH CALGLATPTVITVASGQAARRGWLFRGGDVIEMAASLRQVVFDKTGTLTLGRPLVAGVVG HHHCCCCCCEEEEECCCHHHCCCEECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHCC TKKPDQLLQLAASLEQNSRHPLAHAVLQEAQRHRLSLLSTLATRTYPGSGLAGELEGVEG CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC TVRVGTPEWLQAEGVHWTAELQADVELSSLQGQSVVAVALGEEPLGLVAIDDRLRPDVSV EEEECCCHHHCCCCCEEEEEEEECEEHHHCCCCEEEEEEECCCCCEEEEECCCCCCCHHH ALDRLREQGMTLAMLSGDRRQAVERLGQQLGFQPHQLGWQLLPDQKLERLQRLRKAGLLA HHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCHHHCCCEECCHHHHHHHHHHHHCCEEE MVGDGINDAPALAAADLGIAVGTGTQIAQDSADLVLLGDRLEGLPEALLLARRTMAKVRQ EECCCCCCCCHHHHHHCCEEECCCCHHCCCCCCEEEECCHHCCCHHHHHHHHHHHHHHHH NLTWAFGYNLIALPIAAGLLLPGFGLLLSPPIAALLMALSSITVVVNALALRTT CCEEECCCHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SRNDRPLAHPSVALDIEGMKCGGCVQSVERILLEQPSVARASVNLVARTAWLDLNDPGQ CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHEEEEEEEECCCCCC SLEPILAALATRGFSAQPRNTGSLEQLTPSTRDSLGAWWSQWRQLMVALVLLLLSVLGHL HHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAGGHLELVIVGALPFHAGLATVALLGPGRPILVGGARAALALTPTMDTLVGLGVSSAYL CCCCCEEEEEEECCCHHHHHHHHEEECCCCEEEEECCCEEEEECCCHHHHHHCCCHHHHH ASLVALLWPQVGWPCFFNEPVMLLGFVLLGRFLEERARFRTGRALQQLAQLQPDTARLLA HHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEE GDGTIREVRVGALRPGERVQLLAGDRIPVDGMVLEGHSAVDVSCITGEPLPLEAAPGIEL CCCCEEEEEECCCCCCCCEEEEECCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEE TSGSLNLEATLLLEVRHVGAETALARIISLVEQAQARKAPIQGLADRVAGRFCYGVVSLA ECCCCCEEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LLTFLFWWQLGARLWPEVLHASGQGLVHGYGHHVPLGGVAETSLGLALQLAIAVLVVACP HHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH CALGLATPTVITVASGQAARRGWLFRGGDVIEMAASLRQVVFDKTGTLTLGRPLVAGVVG HHHCCCCCCEEEEECCCHHHCCCEECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHCC TKKPDQLLQLAASLEQNSRHPLAHAVLQEAQRHRLSLLSTLATRTYPGSGLAGELEGVEG CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC TVRVGTPEWLQAEGVHWTAELQADVELSSLQGQSVVAVALGEEPLGLVAIDDRLRPDVSV EEEECCCHHHCCCCCEEEEEEEECEEHHHCCCCEEEEEEECCCCCEEEEECCCCCCCHHH ALDRLREQGMTLAMLSGDRRQAVERLGQQLGFQPHQLGWQLLPDQKLERLQRLRKAGLLA HHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCHHHCCCEECCHHHHHHHHHHHHCCEEE MVGDGINDAPALAAADLGIAVGTGTQIAQDSADLVLLGDRLEGLPEALLLARRTMAKVRQ EECCCCCCCCHHHHHHCCEEECCCCHHCCCCCCEEEECCHHCCCHHHHHHHHHHHHHHHH NLTWAFGYNLIALPIAAGLLLPGFGLLLSPPIAALLMALSSITVVVNALALRTT CCEEECCCHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7937823 [H]