Click here to switch to the map view.

The map label for this gene is 33864250

Identifier: 33864250

GI number: 33864250

Start: 2098535

End: 2099521

Strand: Reverse

Name: 33864250

Synonym: PMT1985

Alternate gene names: NA

Gene position: 2099521-2098535 (Counterclockwise)

Preceding gene: 33864254

Following gene: 33864249

Centisome position: 87.09

GC content: 44.68

Gene sequence:

>987_bases
ATGAGTACTCCCCTTCCGTCGAATTCCCAGGTTCAGCGAGATGCTGGTGATTCTCTTCGCGAGAGCGTGGTTAGACAAAA
GCTTGTGCAACGTATTTGCGGCCAGGCTGTTATCTATTTTGGGGCATTTATTGTTGCAGTTTCGCTGTATAAATTTGTCA
GCGCTTTCTCGTTAGATGTCTCTCCTTGGCCTGAGCTGCAGCTTGGAGTCGCTGGTCTGTTGTTAGTTTTTTTAGGGAAT
TTTCTGCGACGCTCAACCTTCTTAAGGTCTTTGCTTTCGGAGTTTAGTCCTTCGGCTAGAGCAAGTCGCTCTCTATTGAT
GTTGATCCTTGCATTATTTATTATGGGATCTGTAGCTCTATTCAAGCTGTCCGTTCAGGATGTTTTGCGTTACAAACGGC
TGCTTGGAGAAGGAGGAATTCTTGAGTACTTGCAGGCTCTAATTCTGTTCACTTCTGCTTGGGTCTCTTGGCTGATTTCT
AGGGACTTATGGAGGCGTCTCTTGATGCGCTTGCATGGAGCCATTTATGGGATGATTGCTTTGGGAATGCTTTTTGTTGG
CTTAGAGGAGCTTGCTTGGGGTCAGGTTTTGTTCGGCTGGAGAACACCTGATAACATAGCTGCTCTTAATGCTCAAAATC
AGACAACAATTCATAACCTCGAGTTTTTTCAAGATTATCTCGATATTAATCTTTTTCTGGTGTCAGTATTGATTCTGGTT
TTGGTGTTATGGCGGCCATCTTTTGGATTGTTTAAAGCAAGATCATCTCGAGAGGATGTAATTCCTGCCGGAACATTTTT
TCTGCCCAGGTATTTCTGGCCTCTATTCTTTTGTGCTGCGTTTTTGTCTTATTTTGTTGCTACCAGGTCAGCGACAGCTA
TGGTTCTGAATATTGATCAGGAGTGGGCAGAGTTGATGCTTTATCTCTCCTTCGGCCTAGGGTTGCTGCGAACCTATGTC
TTGCTAGCAAATCCGTCAGGGCGCTAA

Upstream 100 bases:

>100_bases
GGTCAATGGCCTAGGTGGCTGTCATGGGCTTCTTCTCTTGACTATCACATGGCCAATTAAGATTGTATTAATCTTCCCTT
AAGACACAGAGCAGTGCCTA

Downstream 100 bases:

>100_bases
AATGGTTGATAGATATCTGCCGGTATTGAGCAAGTTACCGCCTGAGTCAGTGATGTTATGAGTGAAGGTTGTCTTTTGGT
GTTAAGTATAATTTTTTTCG

Product: Pectate lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MSTPLPSNSQVQRDAGDSLRESVVRQKLVQRICGQAVIYFGAFIVAVSLYKFVSAFSLDVSPWPELQLGVAGLLLVFLGN
FLRRSTFLRSLLSEFSPSARASRSLLMLILALFIMGSVALFKLSVQDVLRYKRLLGEGGILEYLQALILFTSAWVSWLIS
RDLWRRLLMRLHGAIYGMIALGMLFVGLEELAWGQVLFGWRTPDNIAALNAQNQTTIHNLEFFQDYLDINLFLVSVLILV
LVLWRPSFGLFKARSSREDVIPAGTFFLPRYFWPLFFCAAFLSYFVATRSATAMVLNIDQEWAELMLYLSFGLGLLRTYV
LLANPSGR

Sequences:

>Translated_328_residues
MSTPLPSNSQVQRDAGDSLRESVVRQKLVQRICGQAVIYFGAFIVAVSLYKFVSAFSLDVSPWPELQLGVAGLLLVFLGN
FLRRSTFLRSLLSEFSPSARASRSLLMLILALFIMGSVALFKLSVQDVLRYKRLLGEGGILEYLQALILFTSAWVSWLIS
RDLWRRLLMRLHGAIYGMIALGMLFVGLEELAWGQVLFGWRTPDNIAALNAQNQTTIHNLEFFQDYLDINLFLVSVLILV
LVLWRPSFGLFKARSSREDVIPAGTFFLPRYFWPLFFCAAFLSYFVATRSATAMVLNIDQEWAELMLYLSFGLGLLRTYV
LLANPSGR
>Mature_327_residues
STPLPSNSQVQRDAGDSLRESVVRQKLVQRICGQAVIYFGAFIVAVSLYKFVSAFSLDVSPWPELQLGVAGLLLVFLGNF
LRRSTFLRSLLSEFSPSARASRSLLMLILALFIMGSVALFKLSVQDVLRYKRLLGEGGILEYLQALILFTSAWVSWLISR
DLWRRLLMRLHGAIYGMIALGMLFVGLEELAWGQVLFGWRTPDNIAALNAQNQTTIHNLEFFQDYLDINLFLVSVLILVL
VLWRPSFGLFKARSSREDVIPAGTFFLPRYFWPLFFCAAFLSYFVATRSATAMVLNIDQEWAELMLYLSFGLGLLRTYVL
LANPSGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37093; Mature: 36962

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPLPSNSQVQRDAGDSLRESVVRQKLVQRICGQAVIYFGAFIVAVSLYKFVSAFSLDV
CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SPWPELQLGVAGLLLVFLGNFLRRSTFLRSLLSEFSPSARASRSLLMLILALFIMGSVAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FKLSVQDVLRYKRLLGEGGILEYLQALILFTSAWVSWLISRDLWRRLLMRLHGAIYGMIA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGMLFVGLEELAWGQVLFGWRTPDNIAALNAQNQTTIHNLEFFQDYLDINLFLVSVLILV
HHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LVLWRPSFGLFKARSSREDVIPAGTFFLPRYFWPLFFCAAFLSYFVATRSATAMVLNIDQ
HHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCH
EWAELMLYLSFGLGLLRTYVLLANPSGR
HHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STPLPSNSQVQRDAGDSLRESVVRQKLVQRICGQAVIYFGAFIVAVSLYKFVSAFSLDV
CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SPWPELQLGVAGLLLVFLGNFLRRSTFLRSLLSEFSPSARASRSLLMLILALFIMGSVAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FKLSVQDVLRYKRLLGEGGILEYLQALILFTSAWVSWLISRDLWRRLLMRLHGAIYGMIA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGMLFVGLEELAWGQVLFGWRTPDNIAALNAQNQTTIHNLEFFQDYLDINLFLVSVLILV
HHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LVLWRPSFGLFKARSSREDVIPAGTFFLPRYFWPLFFCAAFLSYFVATRSATAMVLNIDQ
HHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCH
EWAELMLYLSFGLGLLRTYVLLANPSGR
HHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA