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The map label for this gene is yibD [C]

Identifier: 33864224

GI number: 33864224

Start: 2070273

End: 2071394

Strand: Direct

Name: yibD [C]

Synonym: PMT1959

Alternate gene names: 33864224

Gene position: 2070273-2071394 (Clockwise)

Preceding gene: 33864223

Following gene: 33864227

Centisome position: 85.87

GC content: 39.75

Gene sequence:

>1122_bases
ATGAACCAATGCTTTGAGATGGCAGAGACTGCCAGCCTATCAATAATACTACCTGCTTTCAATGAAAGGGATAATATTTG
CACCATCATCGAATCAATCATTAATCTATCCTTGCAATGCAAGTTAGAGATTATCGTTGTAGACGATGATTCGCCAGATG
GAACCTCTGAGGTGGTATTGGCATTGGCTCGTCAATATTCATTTATCCGATTAGTTAGGCGAGTAGGCAGAAGTGGCCTT
TCCAGCGCTATCAAAGAAGGGCTCTTAAATGCTTGCCATGAATATGCTCTTGTCATGGATTGCGATGGTCAACATCCTAC
GTCAGTCATCAAACAAGCAATAAGTCATCTAAGAGATAAAGACTTAGACCTTGTTGTTGGCAGCAGATTTCTTCAAGGAT
CTGTAATCAATGGTCTCACCAATGATCGCGAAAGCGCTTCTACTTTTGCAAACTTTCTTGCCAAAAAAAGTCTCTCAAAA
AGATATCGCTATCTAACTGATTACATGAGTGGATTTTTTGCAGTCGACTTGAAGCAGGCCATGCCAATCATTCGCTCTGT
TGATGTCAATGGCTTTAAGTTCTTATATGAATTACTAGCCAAAAGCAATGGAGCCTTATTAGTTGGCGAGGTACCCCTGA
TCTTCGAGAAAAGGCTTCATGGTAGCTCTAAACTGGATATCGCAGTCGCATGGGATTTCTTATTATCATTTCTACATTCA
ATCAGCTTAAAGCTTATTCCTCGTCGAGCAATAAGCTTTGCACTCGTTGGCCTAAGTGGTGTTTTTGTACAGCTATTTAG
TGTTTTCATTCTTACCAATACACTTAGCTATTCCTTTCAGTCCTCTCTGCCTATTGCTGTCATATTAGCAGCAACATCCA
ACTACTTAATCAACAATATTTTGACTTTTAGGTTTGCACGTCTTAATGGTTTAAAATTAATAAAGGGCCTTACAAAGTTT
TTACTTGTTTCCTCTTTACCATTCTTGGCCAATATTGGATTGGCATCTGCTTATTACGAGCACATCTCTTCCAACGAGCT
GATCGCACAACTGCTTGGCATCATCTTTGCATTTACTTGGAACTATGTGGCAAGCAGCAAATTTGTTTGGAATACTCCAT
AG

Upstream 100 bases:

>100_bases
AACACGGGTCCAACAACAGACAAGCACTAAAGAAAATATTGATCTATGCTCTACAGGGGCTTGCCTTGCAGAGCATCTAA
GGATGTTAAAATAGAAAGTG

Downstream 100 bases:

>100_bases
CCATATAACTTCTGCTCTTCATTAGTGACACAAAAATATTTTAGGACAATGCCATTGCAGACTTGCAATTGATGTGATGG
ATCTATCTCGCATGACTCAA

Product: glycosyl transferase

Products: NA

Alternate protein names: Dolichol-Phosphate Mannosyltransferase; Glycosyl Transferase Family Protein; Glycosyl Transferase; Glycosyltransferase; Glycosyl Transferase Group 2 Family Protein; Apolipo; Dolichyl-Phosphate-Mannose Synthase; Dolichol Monophosphate Mannose Synthase; Glycosyl Transferase Family 2 Protein; GtrA-Like Protein; Apolipoprotein N-Acyltransferase; Polyprenol-Phosphate Mannosyltransferase; GtrA Family Protein; Cell Wall Biosynthesis Glycosyltransferase; Dolichol-Phosphate-Mannosyltransferase Related Protein; Dolichol-Phosphate Mannosyltransferase Family Protein; Glycosyltransferase Protein; UndP-Glycosyltransferase; Group Glycosyltransferase; Family 2 Glycosyltransferase; Dolichol-Phosphate-Mannosyltransferase; Family Glycosyltransferase; Family 2 Glycosyl Transferase Protein; B-Glycosyltransferase; Cell Wall Biogenesis Glycosyltransferase; Dolichyl Phosphoryl Mannose Synthase; Group 2 Family Glycosyl Transferase; Prenol Monophospho-Mannose Synthase; GAF Sensor Protein; B-Glycosyltransferase Glycosyltransferase Family 2 Protein; Glycosyltransferase Group 2 Family Protein; Glycosyl Transferase Group 2 Family; Polyprenol Phosphate Mannosyl Transferase; Glycosyltransferase Involved In Cell Wall Biogenesis; Monosaccharide Translocase; Polyprenol-Phosphate-Mannose Synthase; Polyprenol-Monophosphomannose Synthase Ppm1B; Family 2 Glycosyl Transferase

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MNQCFEMAETASLSIILPAFNERDNICTIIESIINLSLQCKLEIIVVDDDSPDGTSEVVLALARQYSFIRLVRRVGRSGL
SSAIKEGLLNACHEYALVMDCDGQHPTSVIKQAISHLRDKDLDLVVGSRFLQGSVINGLTNDRESASTFANFLAKKSLSK
RYRYLTDYMSGFFAVDLKQAMPIIRSVDVNGFKFLYELLAKSNGALLVGEVPLIFEKRLHGSSKLDIAVAWDFLLSFLHS
ISLKLIPRRAISFALVGLSGVFVQLFSVFILTNTLSYSFQSSLPIAVILAATSNYLINNILTFRFARLNGLKLIKGLTKF
LLVSSLPFLANIGLASAYYEHISSNELIAQLLGIIFAFTWNYVASSKFVWNTP

Sequences:

>Translated_373_residues
MNQCFEMAETASLSIILPAFNERDNICTIIESIINLSLQCKLEIIVVDDDSPDGTSEVVLALARQYSFIRLVRRVGRSGL
SSAIKEGLLNACHEYALVMDCDGQHPTSVIKQAISHLRDKDLDLVVGSRFLQGSVINGLTNDRESASTFANFLAKKSLSK
RYRYLTDYMSGFFAVDLKQAMPIIRSVDVNGFKFLYELLAKSNGALLVGEVPLIFEKRLHGSSKLDIAVAWDFLLSFLHS
ISLKLIPRRAISFALVGLSGVFVQLFSVFILTNTLSYSFQSSLPIAVILAATSNYLINNILTFRFARLNGLKLIKGLTKF
LLVSSLPFLANIGLASAYYEHISSNELIAQLLGIIFAFTWNYVASSKFVWNTP
>Mature_373_residues
MNQCFEMAETASLSIILPAFNERDNICTIIESIINLSLQCKLEIIVVDDDSPDGTSEVVLALARQYSFIRLVRRVGRSGL
SSAIKEGLLNACHEYALVMDCDGQHPTSVIKQAISHLRDKDLDLVVGSRFLQGSVINGLTNDRESASTFANFLAKKSLSK
RYRYLTDYMSGFFAVDLKQAMPIIRSVDVNGFKFLYELLAKSNGALLVGEVPLIFEKRLHGSSKLDIAVAWDFLLSFLHS
ISLKLIPRRAISFALVGLSGVFVQLFSVFILTNTLSYSFQSSLPIAVILAATSNYLINNILTFRFARLNGLKLIKGLTKF
LLVSSLPFLANIGLASAYYEHISSNELIAQLLGIIFAFTWNYVASSKFVWNTP

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4503363, Length=240, Percent_Identity=30, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71999402, Length=231, Percent_Identity=33.3333333333333, Blast_Score=109, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6325441, Length=235, Percent_Identity=33.6170212765957, Blast_Score=107, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24585265, Length=218, Percent_Identity=31.651376146789, Blast_Score=92, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 41378; Mature: 41378

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQCFEMAETASLSIILPAFNERDNICTIIESIINLSLQCKLEIIVVDDDSPDGTSEVVL
CCHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCEEEEEEEEEEEECCCCCCHHHHHH
ALARQYSFIRLVRRVGRSGLSSAIKEGLLNACHEYALVMDCDGQHPTSVIKQAISHLRDK
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCC
DLDLVVGSRFLQGSVINGLTNDRESASTFANFLAKKSLSKRYRYLTDYMSGFFAVDLKQA
CCHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHH
MPIIRSVDVNGFKFLYELLAKSNGALLVGEVPLIFEKRLHGSSKLDIAVAWDFLLSFLHS
HHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCEEHHHHHHHHHHHHHH
ISLKLIPRRAISFALVGLSGVFVQLFSVFILTNTLSYSFQSSLPIAVILAATSNYLINNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHH
LTFRFARLNGLKLIKGLTKFLLVSSLPFLANIGLASAYYEHISSNELIAQLLGIIFAFTW
HHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NYVASSKFVWNTP
HHHHCCCEEECCC
>Mature Secondary Structure
MNQCFEMAETASLSIILPAFNERDNICTIIESIINLSLQCKLEIIVVDDDSPDGTSEVVL
CCHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCEEEEEEEEEEEECCCCCCHHHHHH
ALARQYSFIRLVRRVGRSGLSSAIKEGLLNACHEYALVMDCDGQHPTSVIKQAISHLRDK
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCC
DLDLVVGSRFLQGSVINGLTNDRESASTFANFLAKKSLSKRYRYLTDYMSGFFAVDLKQA
CCHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHH
MPIIRSVDVNGFKFLYELLAKSNGALLVGEVPLIFEKRLHGSSKLDIAVAWDFLLSFLHS
HHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCEEHHHHHHHHHHHHHH
ISLKLIPRRAISFALVGLSGVFVQLFSVFILTNTLSYSFQSSLPIAVILAATSNYLINNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHH
LTFRFARLNGLKLIKGLTKFLLVSSLPFLANIGLASAYYEHISSNELIAQLLGIIFAFTW
HHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NYVASSKFVWNTP
HHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA