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The map label for this gene is rimM [H]

Identifier: 33864216

GI number: 33864216

Start: 2061012

End: 2061557

Strand: Direct

Name: rimM [H]

Synonym: PMT1951

Alternate gene names: 33864216

Gene position: 2061012-2061557 (Clockwise)

Preceding gene: 33864214

Following gene: 33864217

Centisome position: 85.49

GC content: 55.49

Gene sequence:

>546_bases
ATGCTTTCTCCGCCCATGAACGGCGACGAAGACTGGCTCACCGTGGGAAAAGTGGTGGCCGCCCAAGGAATGCAAGGTGA
ACTACGCATCAACCCCAGCAGTGACTTCCCTGAACGCTTCACTCTTCCTGGTCAACGCTGGCTCAAAGAACGCAACGGTG
AGCCACGACCTATTGAATTGCTGACTGGACGTCAACTACCTGGCAGGTCGCTCTATGTCGTGAAATTTGCTGGGGTGAAC
AATCGCAATGCGGCCGAAGCGCTTGTAGGCCAAAAACTACTGGTGCCTTCAAGTGATCGTCCTAGCCTGGCCGAAGGCGA
GTTTCACCTGCTTGATTTAGTCGGCCTCGAAGCCCGTTTGCAAGCCGAAGGCCCTGCAATCGGTCATGTCATCGACCTCA
CCACCGCCGGGAACGACCTCCTCGAGATCGAATTACTGACAGGAAGGCGGGTTCTGGTTCCATTCGTAGAAGCCATCGTT
CCAGAAGTGCAACTCAATCAAGGCTGGCTCCGACTCACCCCACCTCCTGGACTGCTAGAGCTCTAA

Upstream 100 bases:

>100_bases
CGAATCTCATTCACAACCACATTGGAACCAGGCAAGATCAGTGCTTCTACAGAGGCCATGAGATCAACTTTTGGCAGTCT
TAGCGCCATTATCAGCAGAC

Downstream 100 bases:

>100_bases
GCAATCGACAGAAGCAAGATATCTAAGCGATTCTGGGAACACTGAAGTAGCAAACCGTGGCGACCCCCCCCCTGATTCCA
GTAATCCTCTGTGGGGGAAC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MLSPPMNGDEDWLTVGKVVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIELLTGRQLPGRSLYVVKFAGVN
NRNAAEALVGQKLLVPSSDRPSLAEGEFHLLDLVGLEARLQAEGPAIGHVIDLTTAGNDLLEIELLTGRRVLVPFVEAIV
PEVQLNQGWLRLTPPPGLLEL

Sequences:

>Translated_181_residues
MLSPPMNGDEDWLTVGKVVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIELLTGRQLPGRSLYVVKFAGVN
NRNAAEALVGQKLLVPSSDRPSLAEGEFHLLDLVGLEARLQAEGPAIGHVIDLTTAGNDLLEIELLTGRRVLVPFVEAIV
PEVQLNQGWLRLTPPPGLLEL
>Mature_181_residues
MLSPPMNGDEDWLTVGKVVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIELLTGRQLPGRSLYVVKFAGVN
NRNAAEALVGQKLLVPSSDRPSLAEGEFHLLDLVGLEARLQAEGPAIGHVIDLTTAGNDLLEIELLTGRRVLVPFVEAIV
PEVQLNQGWLRLTPPPGLLEL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=173, Percent_Identity=27.1676300578035, Blast_Score=70, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19808; Mature: 19808

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSPPMNGDEDWLTVGKVVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIEL
CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCEEE
LTGRQLPGRSLYVVKFAGVNNRNAAEALVGQKLLVPSSDRPSLAEGEFHLLDLVGLEARL
EECCCCCCCEEEEEEEECCCCCCHHHHHHCCEEECCCCCCCCCCCCCEEEEEEECCCEEE
QAEGPAIGHVIDLTTAGNDLLEIELLTGRRVLVPFVEAIVPEVQLNQGWLRLTPPPGLLE
ECCCCCEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCEEECCCEEEECCCCCCCC
L
C
>Mature Secondary Structure
MLSPPMNGDEDWLTVGKVVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIEL
CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCEEE
LTGRQLPGRSLYVVKFAGVNNRNAAEALVGQKLLVPSSDRPSLAEGEFHLLDLVGLEARL
EECCCCCCCEEEEEEEECCCCCCHHHHHHCCEEECCCCCCCCCCCCCEEEEEEECCCEEE
QAEGPAIGHVIDLTTAGNDLLEIELLTGRRVLVPFVEAIVPEVQLNQGWLRLTPPPGLLE
ECCCCCEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCEEECCCEEEECCCCCCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA