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The map label for this gene is degT [H]

Identifier: 33864150

GI number: 33864150

Start: 1988562

End: 1989788

Strand: Direct

Name: degT [H]

Synonym: PMT1884

Alternate gene names: 33864150

Gene position: 1988562-1989788 (Clockwise)

Preceding gene: 33864149

Following gene: 33864153

Centisome position: 82.48

GC content: 53.38

Gene sequence:

>1227_bases
ATGCAGGTGCCCCCTTTTAGCCTTACTCAACAGCTAGCCGAACTGGGGCCTGACCTTGATGAGGCGGTCTTGCGCGTGCT
GCGCAGTGGCCAATACATCGGCGGCACCGAAATTGAATCTTTTGAACAAGCCTTTGCTAACTCCCTTGGCGTGCCTTTTG
TCGTTGGTTGCAACAGCGGCACCGATGCTTTGGTCCTGGCCCTGAGGGCACTGGATATCGGAGCAGGAGATGAGGTGATC
AGCTGTTCTTTCAGCTTTTTTGCCACTGCCGAGGCAATCAGTTCGGTAGGCGCCACACCTGTCTTCGTGGACGTCGAAGC
GGACACTTATCTCATCAACCTGGAACAAATCGAAGCAGCAATAACCCCAGACACCCGTGCTCTTTTACCAGTTCACCTTT
TCGGCCGCCCCGTCAACATGGAGCAGCTGATGGCCATCGCCAACAAACATGGGCTGAAAGTGATCGAAGATTGTGCCCAA
GCCAGTGGTGCAGCGTGGAACGGACGGTCCGTAGGCAGTTGGGGCGATGTGGGCTGCTTCAGCTTCTTTCCCACCAAAAA
CCTTGGCGGCGCTGGCGATGGTGGAGCCGTCAGCACACATGACGCAAAGCTTGCTCAGCGAATGCGAGAACTCGCTGTTC
ACGGAATGCCGCGTCGATATTTGCATACAGAACTTGGCTACAACAGCCGACTGGATGCCCTGCAAGCCGCCGTTTTAAAC
GTGAAACTACCAAGGCTTTCTTGCTGGGTTGAAAAGCGACAAGCCATCGCGACCCGTTATCAAACGTTGCTCACAAACCT
TCCTTGCCTCGAGCTTCCAGATCAAACAAAAGCAAGCCATCTGCAACATGCATGGAACCAATTCGTGGTGCGGGTAACGA
GCTGCCCAATGAACCAAAGCAACTCTGAGAGCCTTGGCAAACCGTCAAAAAACAATGGCAGCAATACCCTGCCGGATAGC
AGTTGCCGTGATTGGCTCAAACAAAGTCTTTTAGAACATGGCATTAACACCATCATTTACTACCCAATCCCGATCCATCT
CCAACCGGCCTATGAAGGCCTAAGCCAAGGCCCAGGCAGCCTGCCGGTCACTGAACAGCTTTGCAGTCAAGTGCTGAGCT
TGCCGATCTTCCCAGAATTGCGCGAAGAGCAGCAGCAACAGGTTGTCTCTATGTTGCAGAAGCTGCTGAGTCCAGCAACC
ACAACTCACATGAGCAAGGTTGCTTAA

Upstream 100 bases:

>100_bases
CAACATCAAGTGGCACCCAGGACAAGAGCCCCCCTGGTTCGGCTGATCTGCCACTTCAAAAGCTGCTAAACCGTCTTCGG
CTCGGCTTAAGGTGCTTCTC

Downstream 100 bases:

>100_bases
AAAGCCTTATTTAATACCTGCTATTGCTTGTTATTAGGCACAACCTCCATAGATAAATACTGCTTCGCAGTAATACCAGA
ACAACCAGCGGGATAGTGAT

Product: pleiotropic regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MQVPPFSLTQQLAELGPDLDEAVLRVLRSGQYIGGTEIESFEQAFANSLGVPFVVGCNSGTDALVLALRALDIGAGDEVI
SCSFSFFATAEAISSVGATPVFVDVEADTYLINLEQIEAAITPDTRALLPVHLFGRPVNMEQLMAIANKHGLKVIEDCAQ
ASGAAWNGRSVGSWGDVGCFSFFPTKNLGGAGDGGAVSTHDAKLAQRMRELAVHGMPRRYLHTELGYNSRLDALQAAVLN
VKLPRLSCWVEKRQAIATRYQTLLTNLPCLELPDQTKASHLQHAWNQFVVRVTSCPMNQSNSESLGKPSKNNGSNTLPDS
SCRDWLKQSLLEHGINTIIYYPIPIHLQPAYEGLSQGPGSLPVTEQLCSQVLSLPIFPELREEQQQQVVSMLQKLLSPAT
TTHMSKVA

Sequences:

>Translated_408_residues
MQVPPFSLTQQLAELGPDLDEAVLRVLRSGQYIGGTEIESFEQAFANSLGVPFVVGCNSGTDALVLALRALDIGAGDEVI
SCSFSFFATAEAISSVGATPVFVDVEADTYLINLEQIEAAITPDTRALLPVHLFGRPVNMEQLMAIANKHGLKVIEDCAQ
ASGAAWNGRSVGSWGDVGCFSFFPTKNLGGAGDGGAVSTHDAKLAQRMRELAVHGMPRRYLHTELGYNSRLDALQAAVLN
VKLPRLSCWVEKRQAIATRYQTLLTNLPCLELPDQTKASHLQHAWNQFVVRVTSCPMNQSNSESLGKPSKNNGSNTLPDS
SCRDWLKQSLLEHGINTIIYYPIPIHLQPAYEGLSQGPGSLPVTEQLCSQVLSLPIFPELREEQQQQVVSMLQKLLSPAT
TTHMSKVA
>Mature_408_residues
MQVPPFSLTQQLAELGPDLDEAVLRVLRSGQYIGGTEIESFEQAFANSLGVPFVVGCNSGTDALVLALRALDIGAGDEVI
SCSFSFFATAEAISSVGATPVFVDVEADTYLINLEQIEAAITPDTRALLPVHLFGRPVNMEQLMAIANKHGLKVIEDCAQ
ASGAAWNGRSVGSWGDVGCFSFFPTKNLGGAGDGGAVSTHDAKLAQRMRELAVHGMPRRYLHTELGYNSRLDALQAAVLN
VKLPRLSCWVEKRQAIATRYQTLLTNLPCLELPDQTKASHLQHAWNQFVVRVTSCPMNQSNSESLGKPSKNNGSNTLPDS
SCRDWLKQSLLEHGINTIIYYPIPIHLQPAYEGLSQGPGSLPVTEQLCSQVLSLPIFPELREEQQQQVVSMLQKLLSPAT
TTHMSKVA

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=390, Percent_Identity=34.3589743589744, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI2367285, Length=401, Percent_Identity=31.6708229426434, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 44240; Mature: 44240

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVPPFSLTQQLAELGPDLDEAVLRVLRSGQYIGGTEIESFEQAFANSLGVPFVVGCNSG
CCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCC
TDALVLALRALDIGAGDEVISCSFSFFATAEAISSVGATPVFVDVEADTYLINLEQIEAA
CHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEECCCEEEEEHHHHHHH
ITPDTRALLPVHLFGRPVNMEQLMAIANKHGLKVIEDCAQASGAAWNGRSVGSWGDVGCF
CCCCCHHEEEHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
SFFPTKNLGGAGDGGAVSTHDAKLAQRMRELAVHGMPRRYLHTELGYNSRLDALQAAVLN
EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHH
VKLPRLSCWVEKRQAIATRYQTLLTNLPCLELPDQTKASHLQHAWNQFVVRVTSCPMNQS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCC
NSESLGKPSKNNGSNTLPDSSCRDWLKQSLLEHGINTIIYYPIPIHLQPAYEGLSQGPGS
CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEECHHHHHHHCCCCC
LPVTEQLCSQVLSLPIFPELREEQQQQVVSMLQKLLSPATTTHMSKVA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MQVPPFSLTQQLAELGPDLDEAVLRVLRSGQYIGGTEIESFEQAFANSLGVPFVVGCNSG
CCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCC
TDALVLALRALDIGAGDEVISCSFSFFATAEAISSVGATPVFVDVEADTYLINLEQIEAA
CHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEECCCEEEEEHHHHHHH
ITPDTRALLPVHLFGRPVNMEQLMAIANKHGLKVIEDCAQASGAAWNGRSVGSWGDVGCF
CCCCCHHEEEHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
SFFPTKNLGGAGDGGAVSTHDAKLAQRMRELAVHGMPRRYLHTELGYNSRLDALQAAVLN
EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHH
VKLPRLSCWVEKRQAIATRYQTLLTNLPCLELPDQTKASHLQHAWNQFVVRVTSCPMNQS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCC
NSESLGKPSKNNGSNTLPDSSCRDWLKQSLLEHGINTIIYYPIPIHLQPAYEGLSQGPGS
CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEECHHHHHHHCCCCC
LPVTEQLCSQVLSLPIFPELREEQQQQVVSMLQKLLSPATTTHMSKVA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]