Click here to switch to the map view.

The map label for this gene is clpS [H]

Identifier: 33864059

GI number: 33864059

Start: 1893136

End: 1893528

Strand: Direct

Name: clpS [H]

Synonym: PMT1792

Alternate gene names: 33864059

Gene position: 1893136-1893528 (Clockwise)

Preceding gene: 33864058

Following gene: 33864060

Centisome position: 78.52

GC content: 60.05

Gene sequence:

>393_bases
TTGAAGCTGGGATTGCCCACCATCTGCACCATGGGTGAGCGGCCCACGTACATTGGAGCCGTCCCGATCGTCCTGGCCAT
GGCGGTGAATGCCCCCAGCCCCACTCCCGGTGGTGCCGCCGTCCTCGAAAAGCAAACCGAGCGGATCCGCAAGCAATCGC
CTCATTACAAGGTGCTTCTTCACAACGATCCGGTGAACTCCATGGAATACGTGGTGGTCACCCTCCAGCAGGTCGTACCC
CAGCTAAGCGAGCAGGACGCCATGGCCGTGATGCTGGAAGCCCATAACACCGGCGTCGGGCTGGTGATCGTCTGCGACCT
CGAACCAGCCGAGTTCTACTGCGAAACACTGAAAGCCAAGGGACTGACCAGCACACTGGAACAGGAAAGCTGA

Upstream 100 bases:

>100_bases
AGGCTACTTCCGTCTCTCCGCCTTCAACAGTCGCGTCAATGTAGACGAAGCCATGCGTCGGATCCGTGCCCTCTGAGACC
ACAGAATCAATCCCCCGCCA

Downstream 100 bases:

>100_bases
ACAGGTCTGGCCTACATCCGCTCTGGTCAGCATGGTTAAACCAACGTTGGCGCTGGTTGCCGACAGTGACCCTGATCCCC
CTGCTCTACGGGTTGGGCTG

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKLGLPTICTMGERPTYIGAVPIVLAMAVNAPSPTPGGAAVLEKQTERIRKQSPHYKVLLHNDPVNSMEYVVVTLQQVVP
QLSEQDAMAVMLEAHNTGVGLVIVCDLEPAEFYCETLKAKGLTSTLEQES

Sequences:

>Translated_130_residues
MKLGLPTICTMGERPTYIGAVPIVLAMAVNAPSPTPGGAAVLEKQTERIRKQSPHYKVLLHNDPVNSMEYVVVTLQQVVP
QLSEQDAMAVMLEAHNTGVGLVIVCDLEPAEFYCETLKAKGLTSTLEQES
>Mature_130_residues
MKLGLPTICTMGERPTYIGAVPIVLAMAVNAPSPTPGGAAVLEKQTERIRKQSPHYKVLLHNDPVNSMEYVVVTLQQVVP
QLSEQDAMAVMLEAHNTGVGLVIVCDLEPAEFYCETLKAKGLTSTLEQES

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 14063; Mature: 14063

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLGLPTICTMGERPTYIGAVPIVLAMAVNAPSPTPGGAAVLEKQTERIRKQSPHYKVLL
CCCCCCCEECCCCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
HNDPVNSMEYVVVTLQQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDLEPAEFYCETLKAK
ECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCHHHHHHHHHHCC
GLTSTLEQES
CCCCHHCCCC
>Mature Secondary Structure
MKLGLPTICTMGERPTYIGAVPIVLAMAVNAPSPTPGGAAVLEKQTERIRKQSPHYKVLL
CCCCCCCEECCCCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
HNDPVNSMEYVVVTLQQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDLEPAEFYCETLKAK
ECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCHHHHHHHHHHCC
GLTSTLEQES
CCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA