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The map label for this gene is yjgF [C]

Identifier: 33863465

GI number: 33863465

Start: 1285434

End: 1285862

Strand: Direct

Name: yjgF [C]

Synonym: PMT1195

Alternate gene names: 33863465

Gene position: 1285434-1285862 (Clockwise)

Preceding gene: 33863464

Following gene: 33863466

Centisome position: 53.32

GC content: 54.31

Gene sequence:

>429_bases
ATGATGCAACATTCATGCTCAGAGCAGACCATGAACGCCCCTTCTGTGCAAGCAATCACCACAGCATCAGCTCCAGCACC
AGTCGGGCCCTATAACCAGGCTGTACTAGCAGGAGGATGGCTGTACTGCTCTGGTCAAATTGCCCTTGATCCAACCAACG
GGGTGATGGTTGGGCAAGGTGATGTGGAAGCTGAAACCCGCCAAGTCCTTAGCAATCTGATGGCTGTGCTCACAGCAGCC
GGTGCTGAGCCAAGGCAAGTGATTCGTACCACGGTTTACCTCACGGATCTGGCGGACTTTCAAAGGGTTAATGCTCTCTA
TGGCGAGATCTTCGGGGATGGCATCAGCCCAGCAAGAGCATGTGTTCAAGTAGCCGCCCTTCCAAAAGGTGGGCGAGTGG
AAATCGATTGCGTTGCTTGGCTCGGCTGA

Upstream 100 bases:

>100_bases
AGCTAGTGAGATTGCAATCCATTGAGATCAAGGCCGCTGGAACATAAACGAAGCGGCCTCACACCCAGAGGATTTTCAAC
AGAAACCAAAGCTGAAAGCG

Downstream 100 bases:

>100_bases
AAACAACCAGTGGAAACCTGAAGCGCTTTGATCAAGCGTGTAGCGACTCAAGAAAAAAATCTTGTCCCTGAGCTAGCAGG
AGTTCTGAGATCCGATCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MMQHSCSEQTMNAPSVQAITTASAPAPVGPYNQAVLAGGWLYCSGQIALDPTNGVMVGQGDVEAETRQVLSNLMAVLTAA
GAEPRQVIRTTVYLTDLADFQRVNALYGEIFGDGISPARACVQVAALPKGGRVEIDCVAWLG

Sequences:

>Translated_142_residues
MMQHSCSEQTMNAPSVQAITTASAPAPVGPYNQAVLAGGWLYCSGQIALDPTNGVMVGQGDVEAETRQVLSNLMAVLTAA
GAEPRQVIRTTVYLTDLADFQRVNALYGEIFGDGISPARACVQVAALPKGGRVEIDCVAWLG
>Mature_142_residues
MMQHSCSEQTMNAPSVQAITTASAPAPVGPYNQAVLAGGWLYCSGQIALDPTNGVMVGQGDVEAETRQVLSNLMAVLTAA
GAEPRQVIRTTVYLTDLADFQRVNALYGEIFGDGISPARACVQVAALPKGGRVEIDCVAWLG

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=126, Percent_Identity=48.4126984126984, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=42.4, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=39.2, Blast_Score=92, Evalue=1e-20,
Organism=Escherichia coli, GI1787245, Length=124, Percent_Identity=33.0645161290323, Blast_Score=74, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71982068, Length=126, Percent_Identity=52.3809523809524, Blast_Score=115, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI25148896, Length=126, Percent_Identity=52.3809523809524, Blast_Score=115, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI71982075, Length=126, Percent_Identity=52.3809523809524, Blast_Score=115, Evalue=9e-27,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=31.404958677686, Blast_Score=78, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=32.3529411764706, Blast_Score=70, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19921376, Length=126, Percent_Identity=45.2380952380952, Blast_Score=102, Evalue=6e-23,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14853; Mature: 14853

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQHSCSEQTMNAPSVQAITTASAPAPVGPYNQAVLAGGWLYCSGQIALDPTNGVMVGQG
CCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCEEEECCEEEECCCCCEEECCC
DVEAETRQVLSNLMAVLTAAGAEPRQVIRTTVYLTDLADFQRVNALYGEIFGDGISPARA
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
CVQVAALPKGGRVEIDCVAWLG
HHHHHCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MMQHSCSEQTMNAPSVQAITTASAPAPVGPYNQAVLAGGWLYCSGQIALDPTNGVMVGQG
CCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCEEEECCEEEECCCCCEEECCC
DVEAETRQVLSNLMAVLTAAGAEPRQVIRTTVYLTDLADFQRVNALYGEIFGDGISPARA
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
CVQVAALPKGGRVEIDCVAWLG
HHHHHCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7787182; 8590279; 8905231 [H]