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The map label for this gene is psbC [H]

Identifier: 33863450

GI number: 33863450

Start: 1270781

End: 1272178

Strand: Direct

Name: psbC [H]

Synonym: PMT1180

Alternate gene names: 33863450

Gene position: 1270781-1272178 (Clockwise)

Preceding gene: 33863449

Following gene: 33863452

Centisome position: 52.71

GC content: 53.29

Gene sequence:

>1398_bases
GTGGAAACGCCCTTTAAATCTGGTTCCATACTGCAGAATGCCGGGGGATACAGCCTTGAATCCACCGGTTACGCATGGTG
GGCAGGTAATGCCCGTTTCATCAACCTTTCTGGACGCCTACTTGGCGCCCACGTTGCCCATGCAGGTCTGATGACTTTCT
GGGCAGGAGCCATGCTCCTGTTCGAAGTAAGTCACTTCACCTTCGACAAGCCAATTTTCGAGCAAGGCCTGATCTTGATG
CCACATGTGGCAGCGCTTGGTTATGGCGTTGGTACAGGTGGCGAAATCGTAGACATCTACCCGTTCTTCCATTGCGGGGT
GATGCACTTAATCATCTCTGCTGTGTTCGGCTTGGGTGGGGTCTATCACTCCTTGGCCGGCCCTGAAAAACTTCAGGATT
ACAGCTCTCCATTTTTCAGGCTTGATTGGAAAGACAAAAATCAGATGACCAACATTCTTGGTTACAACCTGATTTTTCTA
GGCTGGGGAGCTCTTGCTCTGATCCTCAAGGCCTGCTTCTTTGGCGGCATCTATGACACCTGGGCTCCAGGTGGTGGCGA
CGTGAGATTAATCACCAGCCCCACACTTGATCCAGGCGTGATCTTTGGATACGTGTTCAGTTCTCCCTGGGGAGGTACCG
GTTGGATCACTGGTGTCAACTCAATGGAAGACCTCATTGGTGGTCACATTTACGTTGCTGCTCTTCTATTCGTTGGCGGC
CATTTCCACATTGCCACCAAGCCATGGGGATGGGTTCGTAGAGCCTTCATCTGGAACGGAGAGGCCTACCTCAGCTACGC
CCTTGCTGGCCTGAGCTGTTGTGGTTTCATTGCCACGGCCTACATATGGTTCAACGTCACCGCCTATCCATCAGAGTTCT
ACGGTCCATCGAACGCCGAAGCCTCTCAAGCCCAGAGCTTCACCTTCCTCGTTCGTGACCAACGCCTTGGAGCAAATATT
GGTACTGCCATGGGGCCAACAGGCCTTGGTAAGTACCTGATGCGTTCTCCTACTGGTGAAATCATCTTTGGTGGAGAAAC
GATGCGCTTCTGGGACTTCCGTGGTCCTTGGTTAGAACCACTGCGTGGACCTAACGGCCTGAGCCTTGACAAGCTTCAGA
ACGATGTTCAGCCATGGCAAGTGCGCCGTGCTGCTGAATACATGACCCACGCCCCCAACGCCTCCATCAACTCAGTAGGT
GGAATCATCACCGAGCCCAACTCGGTTAACTTCGTGAACCTTCGCCAGTGGTTAGCTGGTCATGCGTTCTTCCTAGCTTG
GTTCACCATCGTGGGGCACTGGTTCCACGCTGGTCGCGCCAGGGCTGTTGCAGCAGGGTTTGAAAAAGGCACCGATCGTA
AGACCGAACCAGCCTTGTCAATGCCTGATCTGGACTGA

Upstream 100 bases:

>100_bases
TACACCAAGAACGTTCTTCTTAACGAAGGTATCCGAGCCTGGATGTCCGTTGCGGACCAACCTCACGAAAACTTTGTATT
CCCTGAAGAGGTAATGCCAC

Downstream 100 bases:

>100_bases
TTCTCAACATCAAGCATCGATCTTGTTAATCGGGAAAACCTTCAACCCTCGCCATTGCGGCGAGGGTTTTTTTTCATTAA
GCCAAAGGACATCAAAAAAA

Product: photosystem II PsbC protein (CP43)

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
METPFKSGSILQNAGGYSLESTGYAWWAGNARFINLSGRLLGAHVAHAGLMTFWAGAMLLFEVSHFTFDKPIFEQGLILM
PHVAALGYGVGTGGEIVDIYPFFHCGVMHLIISAVFGLGGVYHSLAGPEKLQDYSSPFFRLDWKDKNQMTNILGYNLIFL
GWGALALILKACFFGGIYDTWAPGGGDVRLITSPTLDPGVIFGYVFSSPWGGTGWITGVNSMEDLIGGHIYVAALLFVGG
HFHIATKPWGWVRRAFIWNGEAYLSYALAGLSCCGFIATAYIWFNVTAYPSEFYGPSNAEASQAQSFTFLVRDQRLGANI
GTAMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLDKLQNDVQPWQVRRAAEYMTHAPNASINSVG
GIITEPNSVNFVNLRQWLAGHAFFLAWFTIVGHWFHAGRARAVAAGFEKGTDRKTEPALSMPDLD

Sequences:

>Translated_465_residues
METPFKSGSILQNAGGYSLESTGYAWWAGNARFINLSGRLLGAHVAHAGLMTFWAGAMLLFEVSHFTFDKPIFEQGLILM
PHVAALGYGVGTGGEIVDIYPFFHCGVMHLIISAVFGLGGVYHSLAGPEKLQDYSSPFFRLDWKDKNQMTNILGYNLIFL
GWGALALILKACFFGGIYDTWAPGGGDVRLITSPTLDPGVIFGYVFSSPWGGTGWITGVNSMEDLIGGHIYVAALLFVGG
HFHIATKPWGWVRRAFIWNGEAYLSYALAGLSCCGFIATAYIWFNVTAYPSEFYGPSNAEASQAQSFTFLVRDQRLGANI
GTAMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLDKLQNDVQPWQVRRAAEYMTHAPNASINSVG
GIITEPNSVNFVNLRQWLAGHAFFLAWFTIVGHWFHAGRARAVAAGFEKGTDRKTEPALSMPDLD
>Mature_465_residues
METPFKSGSILQNAGGYSLESTGYAWWAGNARFINLSGRLLGAHVAHAGLMTFWAGAMLLFEVSHFTFDKPIFEQGLILM
PHVAALGYGVGTGGEIVDIYPFFHCGVMHLIISAVFGLGGVYHSLAGPEKLQDYSSPFFRLDWKDKNQMTNILGYNLIFL
GWGALALILKACFFGGIYDTWAPGGGDVRLITSPTLDPGVIFGYVFSSPWGGTGWITGVNSMEDLIGGHIYVAALLFVGG
HFHIATKPWGWVRRAFIWNGEAYLSYALAGLSCCGFIATAYIWFNVTAYPSEFYGPSNAEASQAQSFTFLVRDQRLGANI
GTAMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLDKLQNDVQPWQVRRAAEYMTHAPNASINSVG
GIITEPNSVNFVNLRQWLAGHAFFLAWFTIVGHWFHAGRARAVAAGFEKGTDRKTEPALSMPDLD

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 50906; Mature: 50906

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METPFKSGSILQNAGGYSLESTGYAWWAGNARFINLSGRLLGAHVAHAGLMTFWAGAMLL
CCCCCCCCCCEECCCCCCCCCCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
FEVSHFTFDKPIFEQGLILMPHVAALGYGVGTGGEIVDIYPFFHCGVMHLIISAVFGLGG
HHHHHHCCCCCHHHCCCEEECHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHH
VYHSLAGPEKLQDYSSPFFRLDWKDKNQMTNILGYNLIFLGWGALALILKACFFGGIYDT
HHHHCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC
WAPGGGDVRLITSPTLDPGVIFGYVFSSPWGGTGWITGVNSMEDLIGGHIYVAALLFVGG
CCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCEECCCCHHHHHHCCHHHHHHHHHHCC
HFHIATKPWGWVRRAFIWNGEAYLSYALAGLSCCGFIATAYIWFNVTAYPSEFYGPSNAE
CEEEECCCHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHCCCCCCC
ASQAQSFTFLVRDQRLGANIGTAMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEP
HHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEEEECCCCCHHH
LRGPNGLSLDKLQNDVQPWQVRRAAEYMTHAPNASINSVGGIITEPNSVNFVNLRQWLAG
CCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEHHHHHHHH
HAFFLAWFTIVGHWFHAGRARAVAAGFEKGTDRKTEPALSMPDLD
HHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
METPFKSGSILQNAGGYSLESTGYAWWAGNARFINLSGRLLGAHVAHAGLMTFWAGAMLL
CCCCCCCCCCEECCCCCCCCCCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
FEVSHFTFDKPIFEQGLILMPHVAALGYGVGTGGEIVDIYPFFHCGVMHLIISAVFGLGG
HHHHHHCCCCCHHHCCCEEECHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHH
VYHSLAGPEKLQDYSSPFFRLDWKDKNQMTNILGYNLIFLGWGALALILKACFFGGIYDT
HHHHCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC
WAPGGGDVRLITSPTLDPGVIFGYVFSSPWGGTGWITGVNSMEDLIGGHIYVAALLFVGG
CCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCEECCCCHHHHHHCCHHHHHHHHHHCC
HFHIATKPWGWVRRAFIWNGEAYLSYALAGLSCCGFIATAYIWFNVTAYPSEFYGPSNAE
CEEEECCCHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHCCCCCCC
ASQAQSFTFLVRDQRLGANIGTAMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEP
HHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEEEECCCCCHHH
LRGPNGLSLDKLQNDVQPWQVRRAAEYMTHAPNASINSVGGIITEPNSVNFVNLRQWLAG
CCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEHHHHHHHH
HAFFLAWFTIVGHWFHAGRARAVAAGFEKGTDRKTEPALSMPDLD
HHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA