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The map label for this gene is psbD

Identifier: 33863449

GI number: 33863449

Start: 1269742

End: 1270797

Strand: Direct

Name: psbD

Synonym: PMT1179

Alternate gene names: 33863449

Gene position: 1269742-1270797 (Clockwise)

Preceding gene: 33863446

Following gene: 33863450

Centisome position: 52.67

GC content: 54.73

Gene sequence:

>1056_bases
ATGACGATCGCTGTAGGACGCGCGCCTCAGCGGGGATGGTTTGACGTCCTCGATGATTGGCTCAAGCGCGACCGCTTCGT
TTTTGTTGGCTGGTCTGGCCTTCTCTTATTCCCTACGGCCTACTTGGCCCTAGGAGGCTGGTTTACCGGCACCACCTTCG
TTACCTCCTGGTACACCCACGGCATTGCAAGTTCCTATCTGGAAGGCTGCAATTTCCTTAGCGCCGCTGTAAGCACCCCC
GCAGATGCGATGGGTCATAGCTTGCTGCTGCTATGGGGCCCTGAAGCGCAGGGTGATTTCGTGCGCTGGTGTCAGCTTGG
TGGCCTCTGGACCTTCGTAGCCCTTCACGGCTCCTTCTCTCTGATCGGCTTCATGCTGAGACAGTTCGAGATTGCCCGTT
TGGTTGGCATCCGCCCCTACAACGCCCTTGCCTTCTCAGGACCAGTCGTTGTCTTCCTGGCGTGTTTCCTCATTTACCCC
CTAGGACAACACAGCTGGTTCTTTGCTCCCTCGTTTGGGGTTGCAGCAATCTTCCGCTTCATTCTCTTCCTTCAGGGCTT
CCATAACTGGACTCTGAATCCCTTCCACATGATGGGAGTAGCAGGAATCCTTGGTGGTGCCTTGCTCTGTGGCATCCATG
GCGCAACGGTGCAGAACACCTTGTTCGAGGATGGCGCTATGTCAAACACCTTTAAAGGGTTTGATCCCACCCAGGAAGAA
GAGACCTATTCCATGGTCACCGCCAACCGTTTCTGGAGCCAGATTTTCGGAATCGCCTTTTCCAACAAACGCTGGCTGCA
CTTCTTCATGCTGTTCGTGCCTGTCATGGGCATGTGGACGCCTTCGGTTGGCATCGTTGGCTTAGCAGTCAACCTGCGTG
CCTACGACTTCGTGTCCCAGGAAGTCCGCGCAGCTGAAGACCCCGAATTCGAAACCTTCTACACCAAGAACGTTCTTCTT
AACGAAGGTATCCGAGCCTGGATGTCCGTTGCGGACCAACCTCACGAAAACTTTGTATTCCCTGAAGAGGTAATGCCACG
TGGAAACGCCCTTTAA

Upstream 100 bases:

>100_bases
GTTTCAGCTCATGGCAACTCTCTCCCAAAGGCCCCTTTGGGATTGTTAAAGTCTTCGGGTATCCCACAGCTTGCGGCAGA
ACCGCACCGTTTTTTTTCCC

Downstream 100 bases:

>100_bases
ATCTGGTTCCATACTGCAGAATGCCGGGGGATACAGCCTTGAATCCACCGGTTACGCATGGTGGGCAGGTAATGCCCGTT
TCATCAACCTTTCTGGACGC

Product: photosystem II PsbD protein (D2)

Products: NA

Alternate protein names: PSII D2 protein; Photosystem Q(A) protein

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MTIAVGRAPQRGWFDVLDDWLKRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWYTHGIASSYLEGCNFLSAAVSTP
ADAMGHSLLLLWGPEAQGDFVRWCQLGGLWTFVALHGSFSLIGFMLRQFEIARLVGIRPYNALAFSGPVVVFLACFLIYP
LGQHSWFFAPSFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCGIHGATVQNTLFEDGAMSNTFKGFDPTQEE
ETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGMWTPSVGIVGLAVNLRAYDFVSQEVRAAEDPEFETFYTKNVLL
NEGIRAWMSVADQPHENFVFPEEVMPRGNAL

Sequences:

>Translated_351_residues
MTIAVGRAPQRGWFDVLDDWLKRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWYTHGIASSYLEGCNFLSAAVSTP
ADAMGHSLLLLWGPEAQGDFVRWCQLGGLWTFVALHGSFSLIGFMLRQFEIARLVGIRPYNALAFSGPVVVFLACFLIYP
LGQHSWFFAPSFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCGIHGATVQNTLFEDGAMSNTFKGFDPTQEE
ETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGMWTPSVGIVGLAVNLRAYDFVSQEVRAAEDPEFETFYTKNVLL
NEGIRAWMSVADQPHENFVFPEEVMPRGNAL
>Mature_350_residues
TIAVGRAPQRGWFDVLDDWLKRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWYTHGIASSYLEGCNFLSAAVSTPA
DAMGHSLLLLWGPEAQGDFVRWCQLGGLWTFVALHGSFSLIGFMLRQFEIARLVGIRPYNALAFSGPVVVFLACFLIYPL
GQHSWFFAPSFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCGIHGATVQNTLFEDGAMSNTFKGFDPTQEEE
TYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGMWTPSVGIVGLAVNLRAYDFVSQEVRAAEDPEFETFYTKNVLLN
EGIRAWMSVADQPHENFVFPEEVMPRGNAL

Specific function: One of the two reaction center proteins of photosystem II (PSII), D2 is needed for assembly of a stable PSII complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBD_PROMM (Q7V6I0)

Other databases:

- EMBL:   BX548175
- RefSeq:   NP_895009.1
- HSSP:   P51765
- ProteinModelPortal:   Q7V6I0
- SMR:   Q7V6I0
- STRING:   Q7V6I0
- GeneID:   1729492
- GenomeReviews:   BX548175_GR
- KEGG:   pmt:PMT1179
- NMPDR:   fig|74547.1.peg.1176
- eggNOG:   NOG05026
- HOGENOM:   HBG284199
- OMA:   WLTGTTF
- ProtClustDB:   CLSK892431
- BioCyc:   PMAR74547:PMT1179-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01383
- InterPro:   IPR000484
- InterPro:   IPR005868
- Gene3D:   G3DSA:1.20.85.10
- PRINTS:   PR00256
- TIGRFAMs:   TIGR01152

Pfam domain/function: PF00124 Photo_RC; SSF81483 Photo_RC_L/M

EC number: NA

Molecular weight: Translated: 39326; Mature: 39195

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS00244 REACTION_CENTER

Important sites: BINDING 213-213 BINDING 260-260

Signals:

None

Transmembrane regions:

HASH(0xe665d1c)-; HASH(0xe7c61d8)-; HASH(0xc1b894c)-; HASH(0xd759f80)-; HASH(0xe44e648)-;

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIAVGRAPQRGWFDVLDDWLKRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWYTH
CEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
GIASSYLEGCNFLSAAVSTPADAMGHSLLLLWGPEAQGDFVRWCQLGGLWTFVALHGSFS
HHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCHHHHHHHHCCHHEEHHHHCCHH
LIGFMLRQFEIARLVGIRPYNALAFSGPVVVFLACFLIYPLGQHSWFFAPSFGVAAIFRF
HHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHH
ILFLQGFHNWTLNPFHMMGVAGILGGALLCGIHGATVQNTLFEDGAMSNTFKGFDPTQEE
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCH
ETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGMWTPSVGIVGLAVNLRAYDFVSQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHH
EVRAAEDPEFETFYTKNVLLNEGIRAWMSVADQPHENFVFPEEVMPRGNAL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCH
>Mature Secondary Structure 
TIAVGRAPQRGWFDVLDDWLKRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWYTH
EEECCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
GIASSYLEGCNFLSAAVSTPADAMGHSLLLLWGPEAQGDFVRWCQLGGLWTFVALHGSFS
HHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCHHHHHHHHCCHHEEHHHHCCHH
LIGFMLRQFEIARLVGIRPYNALAFSGPVVVFLACFLIYPLGQHSWFFAPSFGVAAIFRF
HHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHH
ILFLQGFHNWTLNPFHMMGVAGILGGALLCGIHGATVQNTLFEDGAMSNTFKGFDPTQEE
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCH
ETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGMWTPSVGIVGLAVNLRAYDFVSQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHH
EVRAAEDPEFETFYTKNVLLNEGIRAWMSVADQPHENFVFPEEVMPRGNAL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12917642