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The map label for this gene is psb28 [H]

Identifier: 33862877

GI number: 33862877

Start: 661947

End: 662300

Strand: Reverse

Name: psb28 [H]

Synonym: PMT0604

Alternate gene names: 33862877

Gene position: 662300-661947 (Counterclockwise)

Preceding gene: 33862878

Following gene: 33862876

Centisome position: 27.47

GC content: 49.44

Gene sequence:

>354_bases
ATGGCTAACGCGAACAAAACTGCGGCAATTCAGTTCACACGTGGTGTTGATGAACCTGTCGTTCCTGACATCAAACTGAC
ACGCAGTAGTGACGGCCGTACCGGCAGAGCTCTTTTTGTCTTTGATCAGCCAGAGATCATGGCCCCGGAAACATGGGCAG
GTATCACCGGCATGTTCATGATCGACGAAGAAGGCGAACTCGTGACACGTGAGGTGAATGCACGTTTTGTTAATGGCAAA
CCAAGCGCACTTGAAGTCACCTACATCTGGAAATCAGAAGCGGATTTTGAACGCTTCATGCGATTTGCTAAACGCTATGC
AGCTTGCAACGGTCTGGGCTACTCCCAAAACTAA

Upstream 100 bases:

>100_bases
GCCGCTGAGATGTTGATTGAACGAGAGCTTGTGAGATCAAGCCCAAAGCCACAGCTGGTTATGGACTCAACGTAAGATCC
ATATCTTGTCGTAGAGATCA

Downstream 100 bases:

>100_bases
GGGGAGAATGCAAAGGCTGGCTGCCTGAACACGGGTGAAATTCTCCCAATGGCTCGCTCTGGCTGCACTGATGGCCACGA
GTGTGCTGTTTTGGAGCCTT

Product: photosystem II reaction center protein Psb28

Products: NA

Alternate protein names: Photosystem II 13 kDa protein; Photosystem II reaction center W protein [H]

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MANANKTAAIQFTRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAGITGMFMIDEEGELVTREVNARFVNGK
PSALEVTYIWKSEADFERFMRFAKRYAACNGLGYSQN

Sequences:

>Translated_117_residues
MANANKTAAIQFTRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAGITGMFMIDEEGELVTREVNARFVNGK
PSALEVTYIWKSEADFERFMRFAKRYAACNGLGYSQN
>Mature_116_residues
ANANKTAAIQFTRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAGITGMFMIDEEGELVTREVNARFVNGKP
SALEVTYIWKSEADFERFMRFAKRYAACNGLGYSQN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psb28 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005610
- ProDom:   PD012692 [H]

Pfam domain/function: PF03912 Psb28 [H]

EC number: NA

Molecular weight: Translated: 13119; Mature: 12988

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANANKTAAIQFTRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAGITGMFM
CCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEECCCCEECCCCCCCEEEEEE
IDEEGELVTREVNARFVNGKPSALEVTYIWKSEADFERFMRFAKRYAACNGLGYSQN
ECCCCCEEEEEECEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ANANKTAAIQFTRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAGITGMFM
CCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEECCCCEECCCCCCCEEEEEE
IDEEGELVTREVNARFVNGKPSALEVTYIWKSEADFERFMRFAKRYAACNGLGYSQN
ECCCCCEEEEEECEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA