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The map label for this gene is 33862778

Identifier: 33862778

GI number: 33862778

Start: 556869

End: 557426

Strand: Reverse

Name: 33862778

Synonym: PMT0505

Alternate gene names: NA

Gene position: 557426-556869 (Counterclockwise)

Preceding gene: 33862781

Following gene: 33862775

Centisome position: 23.12

GC content: 45.16

Gene sequence:

>558_bases
ATGCTGAGCTTTCGGTTATTACTCCCTGTGTTCTTTGTCGGGATTGCTTGGCTACAGGAGAGTATTGATCAGATATTTTT
TTCGGGTAATTGGAATCTGCCTATAGGGCCTGGCCTGCCTTGGTGGGGTCTACTAACCGCTCCATTTAGCCATGCAGGTT
TTGGTCATCTGACCTCTAACACGATTATGTTTTTACCGCTAAGCTGGTTAGTACTTAGCAAGGGCATTCGTGATTATATT
GGTATTTTAATTGCTGTTGTTGTGATGGAAATACCGGTTTGGTTATTTTGGCCTAGAGGAAGCCATGGCATGTCAGGTGT
TTTGTATGGACTACTCGGCTACCTTTTGTTAATTGGGTTTCTTGAACGCCGTTTCATGACCATTTTATTGTCAGTCGTGG
GTTTGGTTCTTTTTGGAAATGCACTTCCGGCTTTGATCCCAGGCGTGTCTCCGGCTGGGGTGAGCTGGATCGGTCATGCA
AGTGGATTTCTTGGAGGGATTTTTGCTGCACTTGCTCTTTCACGGGAGCCAAAGCGATTGAATAAGGCTAAGGATTAA

Upstream 100 bases:

>100_bases
GTCTTAATGGAGTTGTAGGGGAGTTGCCGCACAATAGAATGGTGAATCATGCGATTTTCATTTCAAAGCATCTTGAGTGA
ACCAATCCAAACGTAAGCAT

Downstream 100 bases:

>100_bases
TAACAAAATATTTTTGTAGCTATATATACGTTCATATTTAACTCATGACGTCATTTGCGAATGCATAGTTATCAGACAAT
ATCTTATTATTTACCAGGCT

Product: rhomboid family protein

Products: NA

Alternate protein names: Peptidase; Rhomboid-Like Protein; Rhomboid Family

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MLSFRLLLPVFFVGIAWLQESIDQIFFSGNWNLPIGPGLPWWGLLTAPFSHAGFGHLTSNTIMFLPLSWLVLSKGIRDYI
GILIAVVVMEIPVWLFWPRGSHGMSGVLYGLLGYLLLIGFLERRFMTILLSVVGLVLFGNALPALIPGVSPAGVSWIGHA
SGFLGGIFAALALSREPKRLNKAKD

Sequences:

>Translated_185_residues
MLSFRLLLPVFFVGIAWLQESIDQIFFSGNWNLPIGPGLPWWGLLTAPFSHAGFGHLTSNTIMFLPLSWLVLSKGIRDYI
GILIAVVVMEIPVWLFWPRGSHGMSGVLYGLLGYLLLIGFLERRFMTILLSVVGLVLFGNALPALIPGVSPAGVSWIGHA
SGFLGGIFAALALSREPKRLNKAKD
>Mature_185_residues
MLSFRLLLPVFFVGIAWLQESIDQIFFSGNWNLPIGPGLPWWGLLTAPFSHAGFGHLTSNTIMFLPLSWLVLSKGIRDYI
GILIAVVVMEIPVWLFWPRGSHGMSGVLYGLLGYLLLIGFLERRFMTILLSVVGLVLFGNALPALIPGVSPAGVSWIGHA
SGFLGGIFAALALSREPKRLNKAKD

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20232; Mature: 20232

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSFRLLLPVFFVGIAWLQESIDQIFFSGNWNLPIGPGLPWWGLLTAPFSHAGFGHLTSN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHCC
TIMFLPLSWLVLSKGIRDYIGILIAVVVMEIPVWLFWPRGSHGMSGVLYGLLGYLLLIGF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHHHHHHHHH
LERRFMTILLSVVGLVLFGNALPALIPGVSPAGVSWIGHASGFLGGIFAALALSREPKRL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
NKAKD
CCCCC
>Mature Secondary Structure
MLSFRLLLPVFFVGIAWLQESIDQIFFSGNWNLPIGPGLPWWGLLTAPFSHAGFGHLTSN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHCC
TIMFLPLSWLVLSKGIRDYIGILIAVVVMEIPVWLFWPRGSHGMSGVLYGLLGYLLLIGF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHHHHHHHHH
LERRFMTILLSVVGLVLFGNALPALIPGVSPAGVSWIGHASGFLGGIFAALALSREPKRL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
NKAKD
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA