| Definition | Helicobacter hepaticus ATCC 51449 chromosome, complete genome. |
|---|---|
| Accession | NC_004917 |
| Length | 1,799,146 |
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The map label for this gene is 32266990
Identifier: 32266990
GI number: 32266990
Start: 1427685
End: 1430168
Strand: Direct
Name: 32266990
Synonym: HH1491
Alternate gene names: NA
Gene position: 1427685-1430168 (Clockwise)
Preceding gene: 32266989
Following gene: 32266992
Centisome position: 79.35
GC content: 35.1
Gene sequence:
>2484_bases ATGGCAGAAGAACAAGAAAATAATGTTGGTGATAACTTAGAAATCCCAGATTCACAAGGTAAAGATGGTGCAAATGAGGG AGATTCTCAAAGTGAGGAAACTACAGAATCTGCTGCTGGGCAAAATAAAATTAAGGCTATCATAGGGACGTTTGAATCGC ATTTGCAACCTTTTTTGCAAATGCTCAAAGAAAATAAAGTCTTAATGATTGGTGTGATTGCTATTTTTGCACTTATTGTG GTATTTTTGATATTAATTATTGTGCTACTCCTTAGTAAAAATACTTCGCAAGAAAAGCCAGAACCTGCACCTATTTCGCG AAAGATTGTTGAGCCAGCACCAATTCTTGGTGCTTCTAAGCGTCCAGAAGTTGATGATACGGAGCTTGGAAATATGTTAA AAAAAGCGAATCTTCTCTATACACAAGGCGATAAGATGGAAGCTCTTAATTTATTTGAAAATATTGCTGTGTATTCCCAA TCTATTGCCTATTATAATTTGGGCGTTATTGAAGTCAAAGAGGGCGATTATAAAAAAGCAATTAGTTCTTTTGATGGAGC AATTAATGCAGGAGAAGATATTAGCGTTAGCGCTTTTAATGCTGCTTATAGCGCGTATATGTTAGGAGATATGAATCTTT ATGAGTATTATTTGGGTATTAGCTCAAGTTATTTATATTACACAGCAAATCAGCCTCTTTATTCTTATCTCTATGGTCTG TTGCAATATTACAAAGGATTTTATTTTGAATCTCTTTCGCCTTTTTTAAATCCAAGTTCAACAAGCTATGCAAAAGAAAG CAAAAAAATGGCTGCAGAGGCATTTTTAGTTTTTGGCGATGAATATAATGCGCTTGCTCAACTCAAACAGGTAGCAACCA AAGATGATAATTTTGCTATTGCACTTTTGCACGCACGACTTGGAGAATATACACAGGCAAAGCAGTATTTATATGAATAT CTTGGTTCGCACGTAGGAGATGCACAAGCACTTATGGCATTACAGCTTGTTGAGCTCAAAAGTGGAAATTTTAAAGAAAG CGCACTCATTTTAGAGCGACTTAATGCCAAAGAAGAAGACACAAAAGTTTTTAACGATTACCCCATTAAAGTCAAATTAC GTGATGATTTGTTTGATATTAATCTTGCACAGGAAAATTTTTGGAATCGCCGCTTTGAGCATAATAAAATACTTGGCTAC AAGATTCTCTTTTATTATGCGCCTTTTAGAGTTTTTGATGCAAAAAATGCTTTAGCAATTATTGAAGATGGGAATCTTAA TGCTTACTCAAACAATATTGAGAGTGCTAAAAGCACCTTACAAGAGGGACAAAAAGTCTCACAAATTAATCGTTCTATTG CACAAGATTTGCGCACTTTAGCCTTTAATCAAGATATTAGAGAAACCATTAAATCAATGGAATCTTTGCTTAAAGCTTAT CCAAACCATTCAATCTTGCATTATAATGTGGGCTTACTTTATGCACAGATGAGCGATTTTGACAATGCGTATTTGCATTT TATTCGTGCTTATCATCTTGATAGTAATGATACAATGTCGGGCATTTTTGCATTAATGTGTGCAGAACTCACTTATAGAG ATACTTCGCGTCTTAGTAATTCAATTTCTAATGATTTAGCAGAGATTAATTATACAAGCAAAATTGAACATAATTTTTTA CTTTCACTCTTTCGTTATACTGGTAATTCTCCTTCAGATTCGCTATCTTGGCTTAATAATATGCAAAGCGAAGCTTTACA GGATAGAAAGCCTATTTATTACGCGCTTAATGCTGTGTATGGTATTTATACTGCGAATGCAAATCAAATTGTGAGTGCAT TTGAGGGGATAAAAAAGATTTATACAAAAGATGTTGTGGCAAATACAATGTATGAGTTAGGCAAGCGATTTGGCAGCAAT TTAAAAGATTTTGCCTTGCAAATGAATATCATTTATAAAGAAAAAAATCTTGATATGCGCTCAATTTATTATGGTCCCTC TCTTGCACGTGAATTGTATGTTTATGTAGGCTTTGTAACAGGTTCTTTGCGTTCCGTGCAAGAAGAGCTAGAGGCGAAGC TTGTAGTAGAAACTCGCACAAGTAATGGTATTTTGCAGGCATTAGCACTTTCAAATATCTACAGCAATGATTTTGAAAAA GCTTTCGCATTTTATAATTCATTGCTTGATGATCTGCACGAAGATGATTCTCAAACACGTTTTTATGCTGCGATTGCGGC TATGGGGGCAGGTCACCACGAAAATGCGGTGGCCCTCTTGCAACTCTCAAAGATAGAATCCGCGACTAATTTTGAGGCAC GATATGCGCTTGGATTGCTCTATCAAGAAGGTAAAAATATGAAAGCTGCGACACAGCATTATGATAAAATTGCAAATACA GATTTTGAATCTGAATTTTTTGATTTTGATATTGATACAAGCGATTTGCTTGATACGGATAAGCAAGCAAACAAGGATAC ATAG
Upstream 100 bases:
>100_bases AGGACGCACACTTATTGCAATTATGGAAAATTATCAGCAAGTAGATGGGAGTGTAATGATTCCTGAAGTGCTACAAAAGT ATCTATAAAAGTGAGATATT
Downstream 100 bases:
>100_bases CCTTAAAGAGCTAATTTGATTTATTTTTGTAGCATTTGCGGCGTGCGCGCTGGGCTTTGCGTTGAGCAAGGAAGATTCTA TAATTTGTCTGCCACCAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 827; Mature: 826
Protein sequence:
>827_residues MAEEQENNVGDNLEIPDSQGKDGANEGDSQSEETTESAAGQNKIKAIIGTFESHLQPFLQMLKENKVLMIGVIAIFALIV VFLILIIVLLLSKNTSQEKPEPAPISRKIVEPAPILGASKRPEVDDTELGNMLKKANLLYTQGDKMEALNLFENIAVYSQ SIAYYNLGVIEVKEGDYKKAISSFDGAINAGEDISVSAFNAAYSAYMLGDMNLYEYYLGISSSYLYYTANQPLYSYLYGL LQYYKGFYFESLSPFLNPSSTSYAKESKKMAAEAFLVFGDEYNALAQLKQVATKDDNFAIALLHARLGEYTQAKQYLYEY LGSHVGDAQALMALQLVELKSGNFKESALILERLNAKEEDTKVFNDYPIKVKLRDDLFDINLAQENFWNRRFEHNKILGY KILFYYAPFRVFDAKNALAIIEDGNLNAYSNNIESAKSTLQEGQKVSQINRSIAQDLRTLAFNQDIRETIKSMESLLKAY PNHSILHYNVGLLYAQMSDFDNAYLHFIRAYHLDSNDTMSGIFALMCAELTYRDTSRLSNSISNDLAEINYTSKIEHNFL LSLFRYTGNSPSDSLSWLNNMQSEALQDRKPIYYALNAVYGIYTANANQIVSAFEGIKKIYTKDVVANTMYELGKRFGSN LKDFALQMNIIYKEKNLDMRSIYYGPSLARELYVYVGFVTGSLRSVQEELEAKLVVETRTSNGILQALALSNIYSNDFEK AFAFYNSLLDDLHEDDSQTRFYAAIAAMGAGHHENAVALLQLSKIESATNFEARYALGLLYQEGKNMKAATQHYDKIANT DFESEFFDFDIDTSDLLDTDKQANKDT
Sequences:
>Translated_827_residues MAEEQENNVGDNLEIPDSQGKDGANEGDSQSEETTESAAGQNKIKAIIGTFESHLQPFLQMLKENKVLMIGVIAIFALIV VFLILIIVLLLSKNTSQEKPEPAPISRKIVEPAPILGASKRPEVDDTELGNMLKKANLLYTQGDKMEALNLFENIAVYSQ SIAYYNLGVIEVKEGDYKKAISSFDGAINAGEDISVSAFNAAYSAYMLGDMNLYEYYLGISSSYLYYTANQPLYSYLYGL LQYYKGFYFESLSPFLNPSSTSYAKESKKMAAEAFLVFGDEYNALAQLKQVATKDDNFAIALLHARLGEYTQAKQYLYEY LGSHVGDAQALMALQLVELKSGNFKESALILERLNAKEEDTKVFNDYPIKVKLRDDLFDINLAQENFWNRRFEHNKILGY KILFYYAPFRVFDAKNALAIIEDGNLNAYSNNIESAKSTLQEGQKVSQINRSIAQDLRTLAFNQDIRETIKSMESLLKAY PNHSILHYNVGLLYAQMSDFDNAYLHFIRAYHLDSNDTMSGIFALMCAELTYRDTSRLSNSISNDLAEINYTSKIEHNFL LSLFRYTGNSPSDSLSWLNNMQSEALQDRKPIYYALNAVYGIYTANANQIVSAFEGIKKIYTKDVVANTMYELGKRFGSN LKDFALQMNIIYKEKNLDMRSIYYGPSLARELYVYVGFVTGSLRSVQEELEAKLVVETRTSNGILQALALSNIYSNDFEK AFAFYNSLLDDLHEDDSQTRFYAAIAAMGAGHHENAVALLQLSKIESATNFEARYALGLLYQEGKNMKAATQHYDKIANT DFESEFFDFDIDTSDLLDTDKQANKDT >Mature_826_residues AEEQENNVGDNLEIPDSQGKDGANEGDSQSEETTESAAGQNKIKAIIGTFESHLQPFLQMLKENKVLMIGVIAIFALIVV FLILIIVLLLSKNTSQEKPEPAPISRKIVEPAPILGASKRPEVDDTELGNMLKKANLLYTQGDKMEALNLFENIAVYSQS IAYYNLGVIEVKEGDYKKAISSFDGAINAGEDISVSAFNAAYSAYMLGDMNLYEYYLGISSSYLYYTANQPLYSYLYGLL QYYKGFYFESLSPFLNPSSTSYAKESKKMAAEAFLVFGDEYNALAQLKQVATKDDNFAIALLHARLGEYTQAKQYLYEYL GSHVGDAQALMALQLVELKSGNFKESALILERLNAKEEDTKVFNDYPIKVKLRDDLFDINLAQENFWNRRFEHNKILGYK ILFYYAPFRVFDAKNALAIIEDGNLNAYSNNIESAKSTLQEGQKVSQINRSIAQDLRTLAFNQDIRETIKSMESLLKAYP NHSILHYNVGLLYAQMSDFDNAYLHFIRAYHLDSNDTMSGIFALMCAELTYRDTSRLSNSISNDLAEINYTSKIEHNFLL SLFRYTGNSPSDSLSWLNNMQSEALQDRKPIYYALNAVYGIYTANANQIVSAFEGIKKIYTKDVVANTMYELGKRFGSNL KDFALQMNIIYKEKNLDMRSIYYGPSLARELYVYVGFVTGSLRSVQEELEAKLVVETRTSNGILQALALSNIYSNDFEKA FAFYNSLLDDLHEDDSQTRFYAAIAAMGAGHHENAVALLQLSKIESATNFEARYALGLLYQEGKNMKAATQHYDKIANTD FESEFFDFDIDTSDLLDTDKQANKDT
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93311; Mature: 93180
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEEQENNVGDNLEIPDSQGKDGANEGDSQSEETTESAAGQNKIKAIIGTFESHLQPFLQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH MLKENKVLMIGVIAIFALIVVFLILIIVLLLSKNTSQEKPEPAPISRKIVEPAPILGASK HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCC RPEVDDTELGNMLKKANLLYTQGDKMEALNLFENIAVYSQSIAYYNLGVIEVKEGDYKKA CCCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHEEEECCEEEECCCHHHHH ISSFDGAINAGEDISVSAFNAAYSAYMLGDMNLYEYYLGISSSYLYYTANQPLYSYLYGL HHHHCCCCCCCCCCEEEHHHHHHHHHEECCCHHHHHHHCCCCCEEEEECCCCHHHHHHHH LQYYKGFYFESLSPFLNPSSTSYAKESKKMAAEAFLVFGDEYNALAQLKQVATKDDNFAI HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHCCCCCEEE ALLHARLGEYTQAKQYLYEYLGSHVGDAQALMALQLVELKSGNFKESALILERLNAKEED EEHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHH TKVFNDYPIKVKLRDDLFDINLAQENFWNRRFEHNKILGYKILFYYAPFRVFDAKNALAI CHHHCCCCEEEEEECCCEEEEEHHHHHHHHHCCCCCCHHEEEEEEECCEEEEECCCCEEE IEDGNLNAYSNNIESAKSTLQEGQKVSQINRSIAQDLRTLAFNQDIRETIKSMESLLKAY EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC PNHSILHYNVGLLYAQMSDFDNAYLHFIRAYHLDSNDTMSGIFALMCAELTYRDTSRLSN CCCCEEEEEHHEEEEEHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SISNDLAEINYTSKIEHNFLLSLFRYTGNSPSDSLSWLNNMQSEALQDRKPIYYALNAVY HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHEEHHHHH GIYTANANQIVSAFEGIKKIYTKDVVANTMYELGKRFGSNLKDFALQMNIIYKEKNLDMR HEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEEEEEECCCCHH SIYYGPSLARELYVYVGFVTGSLRSVQEELEAKLVVETRTSNGILQALALSNIYSNDFEK EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHH AFAFYNSLLDDLHEDDSQTRFYAAIAAMGAGHHENAVALLQLSKIESATNFEARYALGLL HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCCCHHHHHHHHH YQEGKNMKAATQHYDKIANTDFESEFFDFDIDTSDLLDTDKQANKDT HHCCCCCHHHHHHHHHHHCCCCCCCCEECCCCHHHHHCCCCCCCCCC >Mature Secondary Structure AEEQENNVGDNLEIPDSQGKDGANEGDSQSEETTESAAGQNKIKAIIGTFESHLQPFLQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH MLKENKVLMIGVIAIFALIVVFLILIIVLLLSKNTSQEKPEPAPISRKIVEPAPILGASK HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCC RPEVDDTELGNMLKKANLLYTQGDKMEALNLFENIAVYSQSIAYYNLGVIEVKEGDYKKA CCCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHEEEECCEEEECCCHHHHH ISSFDGAINAGEDISVSAFNAAYSAYMLGDMNLYEYYLGISSSYLYYTANQPLYSYLYGL HHHHCCCCCCCCCCEEEHHHHHHHHHEECCCHHHHHHHCCCCCEEEEECCCCHHHHHHHH LQYYKGFYFESLSPFLNPSSTSYAKESKKMAAEAFLVFGDEYNALAQLKQVATKDDNFAI HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHCCCCCEEE ALLHARLGEYTQAKQYLYEYLGSHVGDAQALMALQLVELKSGNFKESALILERLNAKEED EEHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHH TKVFNDYPIKVKLRDDLFDINLAQENFWNRRFEHNKILGYKILFYYAPFRVFDAKNALAI CHHHCCCCEEEEEECCCEEEEEHHHHHHHHHCCCCCCHHEEEEEEECCEEEEECCCCEEE IEDGNLNAYSNNIESAKSTLQEGQKVSQINRSIAQDLRTLAFNQDIRETIKSMESLLKAY EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC PNHSILHYNVGLLYAQMSDFDNAYLHFIRAYHLDSNDTMSGIFALMCAELTYRDTSRLSN CCCCEEEEEHHEEEEEHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SISNDLAEINYTSKIEHNFLLSLFRYTGNSPSDSLSWLNNMQSEALQDRKPIYYALNAVY HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHEEHHHHH GIYTANANQIVSAFEGIKKIYTKDVVANTMYELGKRFGSNLKDFALQMNIIYKEKNLDMR HEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEEEEEECCCCHH SIYYGPSLARELYVYVGFVTGSLRSVQEELEAKLVVETRTSNGILQALALSNIYSNDFEK EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHH AFAFYNSLLDDLHEDDSQTRFYAAIAAMGAGHHENAVALLQLSKIESATNFEARYALGLL HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCCCHHHHHHHHH YQEGKNMKAATQHYDKIANTDFESEFFDFDIDTSDLLDTDKQANKDT HHCCCCCHHHHHHHHHHHCCCCCCCCEECCCCHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA