| Definition | Helicobacter hepaticus ATCC 51449 chromosome, complete genome. |
|---|---|
| Accession | NC_004917 |
| Length | 1,799,146 |
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The map label for this gene is 32266283
Identifier: 32266283
GI number: 32266283
Start: 760482
End: 761747
Strand: Direct
Name: 32266283
Synonym: HH0784
Alternate gene names: NA
Gene position: 760482-761747 (Clockwise)
Preceding gene: 32266282
Following gene: 32266284
Centisome position: 42.27
GC content: 36.65
Gene sequence:
>1266_bases ATGGGCACAAAAACATTATGGAATTACTTGAAATTGACAGGATTATGCGTTCTTTTGAGTGCTTTTCTTAGCGGTTGTCT CTCTTCTTTTGGTGCAAAACTCCAAGAAGATGCTTCACTCCCACAAATTGATTCTATAAATACACTCGCTGATGTTTCGT CTGTAGGCTTTGAATGGAAATTTCTTGATAATGAACACATAAAAGGATTTGTCATTTATCGTGCTCAAGCAAAAGATAAT CAAAAACTACAAAAAATCGCTACGATTCCAAACCGCTTTGCTACACATTTTTATGATATAAATCTCAATCCCCAAACAAA ATATATTTATGCCTTTGCTACGCTTGGCACTGATAATACGATTTCTCCAAAAAGCAAACCTATTCTTGTGCAAACATCTT TTATTGACGCGGTAGAGAGTGTCTTCGCTCTGAATAATCAACCACGCACCATTAAGCTTATTTGGTCGCCACACCCAAAT CCAAGCATAGATTCTTATTTGGTTGAACGCCTAAATAAAGCAGGTGAATTTAAAACAATCAAAACAATTCCTCATCGCTT AAGTGTAGAGTATTTTGATGATGATTTAAAAGATGGAGAAAGCTACACTTATCGTATTATCGCTCAAAGCTATGAGGGTA TCAAAAGTAAGCCTTCACAAAGCGTGAGTGTAAAAACAATCCCTCAACCTGCACCTATTGAAAATATCCAAGCTACTATA GAGTTGCCACGAGCCATTAAAATTACTTGGAAAGAAGCCCCTGATACACAAGGTGTGAGCAAAAAACAATATAAGATTCT CTATTCTCCCAATGATAAAAACTACAAAAAACTAGCAACTACCAACCAAACAAATTATACACATAAACTCCAAGACAAAG AAGATGGCATAAGTTATTACTACCAAGTTGTGCTTTTAGGCGATAATGGCTTGGAAGGACGTATAAGTAGCACACCTGCT AAAGGTTCAAGTCTTCCACCTCCAAGCAAGCCTTTGCACTTTGAAGGAAAAATCCTTAATGGTAAAGCCACTCTCTCGTG GGAAACACCAAGTGATGAGCGTATTCAAAATTATATCGTTTATCGCAAAGAAGGGAAAGTATGGGCACAAAGTGCGCGCT TTATTGATATATACGATACTACCTTTACCGACAAAGAAATGCAAAAAGGTATCAGTTATAAATATAGCGTAACAAGTATT GACAAAAATGGTATAGAATCTGCGCCCACACAAGAAATAGAACTCTCCATAGAGGCTCAAAAATAA
Upstream 100 bases:
>100_bases TTTATACACCCCAAAACGCAACAAAACTGCACTTTTAAAGCACCTATTTTACCAGATATGCTAAAATTCCTCCAAACTCA CTTCACAAAGGATATACCCG
Downstream 100 bases:
>100_bases TGCCTCATTTTCTTGCATCTCATATTACATTACCACCTATGCCTTTTACACAAGAAGGCTATACCTTTGTATATGAAGCC AAACAATGCAACGATTCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: Fibronectin Type III Domain-Containing Protein; Fibronectin Type III Domain Protein; Fibronectin Type III; Diaminopimelate Decarboxylase Dap Decarboxylase; Fibronectin Domain Containing Protein
Number of amino acids: Translated: 421; Mature: 420
Protein sequence:
>421_residues MGTKTLWNYLKLTGLCVLLSAFLSGCLSSFGAKLQEDASLPQIDSINTLADVSSVGFEWKFLDNEHIKGFVIYRAQAKDN QKLQKIATIPNRFATHFYDINLNPQTKYIYAFATLGTDNTISPKSKPILVQTSFIDAVESVFALNNQPRTIKLIWSPHPN PSIDSYLVERLNKAGEFKTIKTIPHRLSVEYFDDDLKDGESYTYRIIAQSYEGIKSKPSQSVSVKTIPQPAPIENIQATI ELPRAIKITWKEAPDTQGVSKKQYKILYSPNDKNYKKLATTNQTNYTHKLQDKEDGISYYYQVVLLGDNGLEGRISSTPA KGSSLPPPSKPLHFEGKILNGKATLSWETPSDERIQNYIVYRKEGKVWAQSARFIDIYDTTFTDKEMQKGISYKYSVTSI DKNGIESAPTQEIELSIEAQK
Sequences:
>Translated_421_residues MGTKTLWNYLKLTGLCVLLSAFLSGCLSSFGAKLQEDASLPQIDSINTLADVSSVGFEWKFLDNEHIKGFVIYRAQAKDN QKLQKIATIPNRFATHFYDINLNPQTKYIYAFATLGTDNTISPKSKPILVQTSFIDAVESVFALNNQPRTIKLIWSPHPN PSIDSYLVERLNKAGEFKTIKTIPHRLSVEYFDDDLKDGESYTYRIIAQSYEGIKSKPSQSVSVKTIPQPAPIENIQATI ELPRAIKITWKEAPDTQGVSKKQYKILYSPNDKNYKKLATTNQTNYTHKLQDKEDGISYYYQVVLLGDNGLEGRISSTPA KGSSLPPPSKPLHFEGKILNGKATLSWETPSDERIQNYIVYRKEGKVWAQSARFIDIYDTTFTDKEMQKGISYKYSVTSI DKNGIESAPTQEIELSIEAQK >Mature_420_residues GTKTLWNYLKLTGLCVLLSAFLSGCLSSFGAKLQEDASLPQIDSINTLADVSSVGFEWKFLDNEHIKGFVIYRAQAKDNQ KLQKIATIPNRFATHFYDINLNPQTKYIYAFATLGTDNTISPKSKPILVQTSFIDAVESVFALNNQPRTIKLIWSPHPNP SIDSYLVERLNKAGEFKTIKTIPHRLSVEYFDDDLKDGESYTYRIIAQSYEGIKSKPSQSVSVKTIPQPAPIENIQATIE LPRAIKITWKEAPDTQGVSKKQYKILYSPNDKNYKKLATTNQTNYTHKLQDKEDGISYYYQVVLLGDNGLEGRISSTPAK GSSLPPPSKPLHFEGKILNGKATLSWETPSDERIQNYIVYRKEGKVWAQSARFIDIYDTTFTDKEMQKGISYKYSVTSID KNGIESAPTQEIELSIEAQK
Specific function: Unknown
COG id: COG3401
COG function: function code R; Fibronectin type 3 domain-containing protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47483; Mature: 47352
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50853 FN3 L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTKTLWNYLKLTGLCVLLSAFLSGCLSSFGAKLQEDASLPQIDSINTLADVSSVGFEWK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHCCEEEE FLDNEHIKGFVIYRAQAKDNQKLQKIATIPNRFATHFYDINLNPQTKYIYAFATLGTDNT EECCCCCEEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCC ISPKSKPILVQTSFIDAVESVFALNNQPRTIKLIWSPHPNPSIDSYLVERLNKAGEFKTI CCCCCCEEEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEE KTIPHRLSVEYFDDDLKDGESYTYRIIAQSYEGIKSKPSQSVSVKTIPQPAPIENIQATI ECCCCCEEEEECCCCCCCCCCEEEEEEEEHHCCCCCCCCCCEEEEECCCCCCCCCCEEEE ELPRAIKITWKEAPDTQGVSKKQYKILYSPNDKNYKKLATTNQTNYTHKLQDKEDGISYY ECCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCEEECCCCCCCCEEE YQVVLLGDNGLEGRISSTPAKGSSLPPPSKPLHFEGKILNGKATLSWETPSDERIQNYIV EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECCEEEEEECCCCHHHHEEEEE YRKEGKVWAQSARFIDIYDTTFTDKEMQKGISYKYSVTSIDKNGIESAPTQEIELSIEAQ EEECCCEEECCCEEEEEECCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEC K C >Mature Secondary Structure GTKTLWNYLKLTGLCVLLSAFLSGCLSSFGAKLQEDASLPQIDSINTLADVSSVGFEWK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHCCEEEE FLDNEHIKGFVIYRAQAKDNQKLQKIATIPNRFATHFYDINLNPQTKYIYAFATLGTDNT EECCCCCEEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCC ISPKSKPILVQTSFIDAVESVFALNNQPRTIKLIWSPHPNPSIDSYLVERLNKAGEFKTI CCCCCCEEEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEE KTIPHRLSVEYFDDDLKDGESYTYRIIAQSYEGIKSKPSQSVSVKTIPQPAPIENIQATI ECCCCCEEEEECCCCCCCCCCEEEEEEEEHHCCCCCCCCCCEEEEECCCCCCCCCCEEEE ELPRAIKITWKEAPDTQGVSKKQYKILYSPNDKNYKKLATTNQTNYTHKLQDKEDGISYY ECCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCEEECCCCCCCCEEE YQVVLLGDNGLEGRISSTPAKGSSLPPPSKPLHFEGKILNGKATLSWETPSDERIQNYIV EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECCEEEEEECCCCHHHHEEEEE YRKEGKVWAQSARFIDIYDTTFTDKEMQKGISYKYSVTSIDKNGIESAPTQEIELSIEAQ EEECCCEEECCCEEEEEECCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEC K C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA