| Definition | Helicobacter hepaticus ATCC 51449 chromosome, complete genome. |
|---|---|
| Accession | NC_004917 |
| Length | 1,799,146 |
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The map label for this gene is 32266021
Identifier: 32266021
GI number: 32266021
Start: 503427
End: 504737
Strand: Direct
Name: 32266021
Synonym: HH0522
Alternate gene names: NA
Gene position: 503427-504737 (Clockwise)
Preceding gene: 32266020
Following gene: 32266022
Centisome position: 27.98
GC content: 39.66
Gene sequence:
>1311_bases ATGAAAAAAACTTTAGTAGTTGCAGCCTTAGGAGGCTTATTTGCTTCAAGCGTGAATGCTTTTGATTACAAAGTAAGTGG TTCGGCGGAAAGTTTTACAAAATGGGGCTTTAATAATCAAAAACTTGATATACCCAACAATCAAGCTCCCACAGAGAGTT TTACGACATTATTTGCACAGCTTAATCTCAATGCAGATTTAGGAGCTGGATTTAAAGCAGGGTTTGGCGGGGCTTTGGGT GGATTAGCTTTTGATTCTACACGAAATGACCCTATATTGGATGGTGTAGGCTCTCCTGTTATTACTTCTTATTTTGGGAC TGCGTGGGATAAGGCAAAAGTGCAAAATTATATGGTGCAAAATGCCTTTTTAGAGTATAGCTATAGTGATAATGTCTATT TTAAAGCCGGACGTTATCAATCTGGCAAGGTAGGTGAGTGGTTTAGTGGCTATAATCAAGGAGCAGAGGGTTATTTACAA GCTGGAAGTGTGAAACTCTGGGGATTTTTATCAAATCGCCGTGCCTTTGCGTATGACCAATGGTTTAATGATTTCTATCG TGTTCACGGAATTTATGGGGGAGGGGCTACGCGTAATACCTATGCTTTGGGGCTTAATCTTACTTTTGGTGGGCTTACAC TCTCTGGATTCTCTTATTATACACCCGGAATAGTAACTGCTCCGGGCGCAAGTATTACCTTTGATACCAATCCAAACAAA GAATCTCAAGGCTTTAGAAGTATTACCAAACTTCGTTTTCTCGCACCTATAGCGGATATAAGCCAAAGAATCAATGCTAA AAGGTGGGGAGAGATAGATAAACACTCTTATACACTTTATCTTGAGCAACGATTTGAAGTCAATCTATTTAACTTTGGTG CAGGATATTATCAAAACTTTGGCAATGCAAATGAACTCATTGGACGCTGGGGAAATCCTATCTCTATTGATATTTGGACA GGAAGCGCATATGATATAGGACAATCCTTAAATGACATCATCGGCAGAAATGCCATTACAGGTTTTGGGTATATCGGGGC AAACTATAGCAGCTTTGATTGGAAAATATTAGGACGTGGAACAAACAGCCCGCGAAGTGCAGAACAAAGTGTGGCATTTA TTCTTAATTATCAAATCCGCGAAGACATCGCTGTAGGTGGAAAACTAGAATGGTTTAGTGATACAACTAAGAAAGGGTAT AGTCCTCTTGGAGGCTCTTATCAGTCTCAAAATAATGGTGGCACTATGCTTACTCAAAACCGCAAAGATGACCGATCTCA CGCATTTTTCTATATACGCCATATATTCTAA
Upstream 100 bases:
>100_bases ATTAAGCATAAAATGTTAGAATACATATTGTATTCTAAAAAATACGTAAATTTATTTGAAATATCTGCAAATATTTCAAA CCTCAAATTAAGGATAAAAA
Downstream 100 bases:
>100_bases AACTTATGGATTGTGGTATAATGCTGGCTCATAGAATCTTACCTAACATTAAGATTCTATAAATTTATCATTAATTATAT CATTATAACAATCCTAAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Protein; Hof Family Outer Membrane Protein; Outer Membrane Protein HofH; Outermembrane Protein HofE; Outer Membrane Protein HofF; Outer Membrane Protein HofA; Outer Membrane Protein HofC; Outer Membrane Protein HofB; Outer Membrane Protein HofD
Number of amino acids: Translated: 436; Mature: 436
Protein sequence:
>436_residues MKKTLVVAALGGLFASSVNAFDYKVSGSAESFTKWGFNNQKLDIPNNQAPTESFTTLFAQLNLNADLGAGFKAGFGGALG GLAFDSTRNDPILDGVGSPVITSYFGTAWDKAKVQNYMVQNAFLEYSYSDNVYFKAGRYQSGKVGEWFSGYNQGAEGYLQ AGSVKLWGFLSNRRAFAYDQWFNDFYRVHGIYGGGATRNTYALGLNLTFGGLTLSGFSYYTPGIVTAPGASITFDTNPNK ESQGFRSITKLRFLAPIADISQRINAKRWGEIDKHSYTLYLEQRFEVNLFNFGAGYYQNFGNANELIGRWGNPISIDIWT GSAYDIGQSLNDIIGRNAITGFGYIGANYSSFDWKILGRGTNSPRSAEQSVAFILNYQIREDIAVGGKLEWFSDTTKKGY SPLGGSYQSQNNGGTMLTQNRKDDRSHAFFYIRHIF
Sequences:
>Translated_436_residues MKKTLVVAALGGLFASSVNAFDYKVSGSAESFTKWGFNNQKLDIPNNQAPTESFTTLFAQLNLNADLGAGFKAGFGGALG GLAFDSTRNDPILDGVGSPVITSYFGTAWDKAKVQNYMVQNAFLEYSYSDNVYFKAGRYQSGKVGEWFSGYNQGAEGYLQ AGSVKLWGFLSNRRAFAYDQWFNDFYRVHGIYGGGATRNTYALGLNLTFGGLTLSGFSYYTPGIVTAPGASITFDTNPNK ESQGFRSITKLRFLAPIADISQRINAKRWGEIDKHSYTLYLEQRFEVNLFNFGAGYYQNFGNANELIGRWGNPISIDIWT GSAYDIGQSLNDIIGRNAITGFGYIGANYSSFDWKILGRGTNSPRSAEQSVAFILNYQIREDIAVGGKLEWFSDTTKKGY SPLGGSYQSQNNGGTMLTQNRKDDRSHAFFYIRHIF >Mature_436_residues MKKTLVVAALGGLFASSVNAFDYKVSGSAESFTKWGFNNQKLDIPNNQAPTESFTTLFAQLNLNADLGAGFKAGFGGALG GLAFDSTRNDPILDGVGSPVITSYFGTAWDKAKVQNYMVQNAFLEYSYSDNVYFKAGRYQSGKVGEWFSGYNQGAEGYLQ AGSVKLWGFLSNRRAFAYDQWFNDFYRVHGIYGGGATRNTYALGLNLTFGGLTLSGFSYYTPGIVTAPGASITFDTNPNK ESQGFRSITKLRFLAPIADISQRINAKRWGEIDKHSYTLYLEQRFEVNLFNFGAGYYQNFGNANELIGRWGNPISIDIWT GSAYDIGQSLNDIIGRNAITGFGYIGANYSSFDWKILGRGTNSPRSAEQSVAFILNYQIREDIAVGGKLEWFSDTTKKGY SPLGGSYQSQNNGGTMLTQNRKDDRSHAFFYIRHIF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48181; Mature: 48181
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTLVVAALGGLFASSVNAFDYKVSGSAESFTKWGFNNQKLDIPNNQAPTESFTTLFAQ CCCEEEEEEHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEECCCCCCCCHHHHEEEEE LNLNADLGAGFKAGFGGALGGLAFDSTRNDPILDGVGSPVITSYFGTAWDKAKVQNYMVQ EECCCCCCCCCCCCCCCHHCCEEECCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH NAFLEYSYSDNVYFKAGRYQSGKVGEWFSGYNQGAEGYLQAGSVKLWGFLSNRRAFAYDQ HHEEEEECCCCEEEEECCCCCCCCCHHHHCCCCCCCCEEECCCEEEEEEECCCEEEEHHH WFNDFYRVHGIYGGGATRNTYALGLNLTFGGLTLSGFSYYTPGIVTAPGASITFDTNPNK HHHHHEEEEEEECCCCCCCEEEEEEEEEECCEEECCCCEECCCEEECCCCEEEECCCCCC ESQGFRSITKLRFLAPIADISQRINAKRWGEIDKHSYTLYLEQRFEVNLFNFGAGYYQNF CHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEEEEEEEEEEEEECCCHHHHCC GNANELIGRWGNPISIDIWTGSAYDIGQSLNDIIGRNAITGFGYIGANYSSFDWKILGRG CCHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECC TNSPRSAEQSVAFILNYQIREDIAVGGKLEWFSDTTKKGYSPLGGSYQSQNNGGTMLTQN CCCCCCHHHCEEEEEEEEEHHHHCCCCEEEECCCCHHCCCCCCCCCCCCCCCCCEEEECC RKDDRSHAFFYIRHIF CCCCCCEEEEEEEECC >Mature Secondary Structure MKKTLVVAALGGLFASSVNAFDYKVSGSAESFTKWGFNNQKLDIPNNQAPTESFTTLFAQ CCCEEEEEEHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEECCCCCCCCHHHHEEEEE LNLNADLGAGFKAGFGGALGGLAFDSTRNDPILDGVGSPVITSYFGTAWDKAKVQNYMVQ EECCCCCCCCCCCCCCCHHCCEEECCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH NAFLEYSYSDNVYFKAGRYQSGKVGEWFSGYNQGAEGYLQAGSVKLWGFLSNRRAFAYDQ HHEEEEECCCCEEEEECCCCCCCCCHHHHCCCCCCCCEEECCCEEEEEEECCCEEEEHHH WFNDFYRVHGIYGGGATRNTYALGLNLTFGGLTLSGFSYYTPGIVTAPGASITFDTNPNK HHHHHEEEEEEECCCCCCCEEEEEEEEEECCEEECCCCEECCCEEECCCCEEEECCCCCC ESQGFRSITKLRFLAPIADISQRINAKRWGEIDKHSYTLYLEQRFEVNLFNFGAGYYQNF CHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEEEEEEEEEEEEECCCHHHHCC GNANELIGRWGNPISIDIWTGSAYDIGQSLNDIIGRNAITGFGYIGANYSSFDWKILGRG CCHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECC TNSPRSAEQSVAFILNYQIREDIAVGGKLEWFSDTTKKGYSPLGGSYQSQNNGGTMLTQN CCCCCCHHHCEEEEEEEEEHHHHCCCCEEEECCCCHHCCCCCCCCCCCCCCCCCEEEECC RKDDRSHAFFYIRHIF CCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA