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The map label for this gene is exbD [H]

Identifier: 32265853

GI number: 32265853

Start: 342657

End: 343037

Strand: Direct

Name: exbD [H]

Synonym: HH0354

Alternate gene names: 32265853

Gene position: 342657-343037 (Clockwise)

Preceding gene: 32265852

Following gene: 32265854

Centisome position: 19.05

GC content: 31.23

Gene sequence:

>381_bases
ATGAGAATCCCAAAAAAAGATGGCTTGAATATTGTCCCTTTCATTGATGTAATGCTTGTCCTTTTGGCTATTGTGCTAAG
TGTATCTACTTTTATAGCTCAAGGGCAAATTAAAGTAGAACTTCCCTATGCAAGCCAAAATCAACAAGAAAAACACGAGA
AACCAAGTATAATTACTATTGATGAGCAGAATATTATTTATTTCAATGATAAAGCTACCGATATAGAATCTCTTAAGGCT
GAGATTGCCAATGTTGATAACAAAACACTTATTCAACTCAAAAGTGATAAAAATGCGAAATTTGAAACTTTTATTCAAAT
CATAGATATTTTAAAGGAGAAAGGGCATGAAAACTTCGGAATTTCAACAAAAACCAAGTAA

Upstream 100 bases:

>100_bases
CTATCCCTACTTTAATTGTATATAATTGCTTTGTGCGTAAAATGGACGTGCAGCTTAATCGCTATAAACTCAGTAAAAAA
GACATCAACGAGAGATAAAT

Downstream 100 bases:

>100_bases
TCTATGTCATATGCAAAGGCTAAGCATAAATCACACAGCTCATCAAAAAAATAATCAGCATACTTTCTTTACACCCAGCA
AAGTAGGATTTGTGCTCAGT

Product: biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MRIPKKDGLNIVPFIDVMLVLLAIVLSVSTFIAQGQIKVELPYASQNQQEKHEKPSIITIDEQNIIYFNDKATDIESLKA
EIANVDNKTLIQLKSDKNAKFETFIQIIDILKEKGHENFGISTKTK

Sequences:

>Translated_126_residues
MRIPKKDGLNIVPFIDVMLVLLAIVLSVSTFIAQGQIKVELPYASQNQQEKHEKPSIITIDEQNIIYFNDKATDIESLKA
EIANVDNKTLIQLKSDKNAKFETFIQIIDILKEKGHENFGISTKTK
>Mature_126_residues
MRIPKKDGLNIVPFIDVMLVLLAIVLSVSTFIAQGQIKVELPYASQNQQEKHEKPSIITIDEQNIIYFNDKATDIESLKA
EIANVDNKTLIQLKSDKNAKFETFIQIIDILKEKGHENFGISTKTK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=116, Percent_Identity=34.4827586206897, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014171 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14271; Mature: 14271

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIPKKDGLNIVPFIDVMLVLLAIVLSVSTFIAQGQIKVELPYASQNQQEKHEKPSIITI
CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCEEEE
DEQNIIYFNDKATDIESLKAEIANVDNKTLIQLKSDKNAKFETFIQIIDILKEKGHENFG
CCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC
ISTKTK
CCCCCC
>Mature Secondary Structure
MRIPKKDGLNIVPFIDVMLVLLAIVLSVSTFIAQGQIKVELPYASQNQQEKHEKPSIITI
CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCEEEE
DEQNIIYFNDKATDIESLKAEIANVDNKTLIQLKSDKNAKFETFIQIIDILKEKGHENFG
CCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC
ISTKTK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]