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The map label for this gene is hpaD

Identifier: 30065593

GI number: 30065593

Start: 4545656

End: 4546507

Strand: Reverse

Name: hpaD

Synonym: S4652

Alternate gene names: 30065593

Gene position: 4546507-4545656 (Counterclockwise)

Preceding gene: 30065594

Following gene: 30065592

Centisome position: 98.85

GC content: 54.34

Gene sequence:

>852_bases
ATGGGTAAGTTAGCGTTAGCCGCCAAGATCACGCACGTACCGTCGATGTATCTCTCTGAACTACCAGGAAAAAACCACGG
TTGTCGCCAGGGTGCGATCGACGGGCATAAAGAGATCAGCAAGCGTTGCCGGGAAATGGGCGTCGATACCATTATCGTTT
TCGATACTCACTGGCTGGTCAACAGTGCTTATCACATCAACTGTGCAGACCATTTTGAAGGCGTCTACACCAGCAACGAG
CTGCCGCATTTTATTCGCGACATGACCTACAACTACGAGGGCAACCCGGAGTTGGGGCAGCTAATTGCCGAGGAAGCCTT
AAAGCTCGGCGTGCGGGCAAAAGCGCACAATATTCCCAGCCTGAAACTGGAATACGGCACGCTGGTACCGATGCGCTACA
TGAATGAAGACAAGCACTTCAAAGTGGTCTCCATTTCGGCTTTCTGCACGGTTCACGATTTTGCCGACAGCCGCAAGCTG
GGCGAAGCGATTCTGAAAGCGATCGAACAGTACGACGGCACCGTGGCGGTCCTTGCCAGCGGTTCGTTATCGCACCGCTT
TATTGACGATCAGCGTGCGGAAGAAGGGATGAACAGCTACACCCGCGAGTTCGACCGCCAGATGGACGAGCGTGTGGTGA
AGCTGTGGCGCGAAGGCCAGTTCAAAGAGTTTTGCAATATGCTGCCGGAGTACGCCGACTACTGCTACGGCGAAGGCAAT
ATGCACGACACGGTGATGCTGCTGGGGATGCTAGGCTGGGATAAATACGACGGCAAGGTGGAGTTTATTACCGAGCTGTT
CCCAAGCTCTGGCACCGGTCAGGTTAACGCTGTTTTCCCGCTGCCCGCGTAA

Upstream 100 bases:

>100_bases
GGGCGTGAAGGCGGTGAGTACAGCTTCGAAGTGTTCGCGGAAATGAAGAACGTCTGCATTTCCATGGGCGACCATCCAAT
TCCGAAATGGGGAGTCTGAT

Downstream 100 bases:

>100_bases
GGACGTTTTATGCCGCACTTTATCGTGGAATGTACTGAAAATATTCGTGAAGAAGCCCGCTTACCTGAGCTGTTTGCCAG
TGTTAACACTGCACTGGCGG

Product: homoprotocatechuate dyoxygenase

Products: NA

Alternate protein names: Homoprotocatechuate 2,3-dioxygenase; HPC dioxygenase [H]

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MGKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEISKRCREMGVDTIIVFDTHWLVNSAYHINCADHFEGVYTSNE
LPHFIRDMTYNYEGNPELGQLIAEEALKLGVRAKAHNIPSLKLEYGTLVPMRYMNEDKHFKVVSISAFCTVHDFADSRKL
GEAILKAIEQYDGTVAVLASGSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVKLWREGQFKEFCNMLPEYADYCYGEGN
MHDTVMLLGMLGWDKYDGKVEFITELFPSSGTGQVNAVFPLPA

Sequences:

>Translated_283_residues
MGKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEISKRCREMGVDTIIVFDTHWLVNSAYHINCADHFEGVYTSNE
LPHFIRDMTYNYEGNPELGQLIAEEALKLGVRAKAHNIPSLKLEYGTLVPMRYMNEDKHFKVVSISAFCTVHDFADSRKL
GEAILKAIEQYDGTVAVLASGSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVKLWREGQFKEFCNMLPEYADYCYGEGN
MHDTVMLLGMLGWDKYDGKVEFITELFPSSGTGQVNAVFPLPA
>Mature_282_residues
GKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEISKRCREMGVDTIIVFDTHWLVNSAYHINCADHFEGVYTSNEL
PHFIRDMTYNYEGNPELGQLIAEEALKLGVRAKAHNIPSLKLEYGTLVPMRYMNEDKHFKVVSISAFCTVHDFADSRKLG
EAILKAIEQYDGTVAVLASGSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVKLWREGQFKEFCNMLPEYADYCYGEGNM
HDTVMLLGMLGWDKYDGKVEFITELFPSSGTGQVNAVFPLPA

Specific function: Transforms homoprotocatechuic acid (HPC) into 5- carboxymethyl-2-hydroxy-muconic semialdehyde (CHMS) [H]

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011984
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: =1.13.11.15 [H]

Molecular weight: Translated: 32033; Mature: 31902

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEISKRCREMGVDTIIVFDTHWLV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECHHHH
NSAYHINCADHFEGVYTSNELPHFIRDMTYNYEGNPELGQLIAEEALKLGVRAKAHNIPS
CCEEEEECHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCC
LKLEYGTLVPMRYMNEDKHFKVVSISAFCTVHDFADSRKLGEAILKAIEQYDGTVAVLAS
EEEECCCCCCHHHCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
GSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVKLWREGQFKEFCNMLPEYADYCYGEGN
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
MHDTVMLLGMLGWDKYDGKVEFITELFPSSGTGQVNAVFPLPA
CHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCC
>Mature Secondary Structure 
GKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEISKRCREMGVDTIIVFDTHWLV
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECHHHH
NSAYHINCADHFEGVYTSNELPHFIRDMTYNYEGNPELGQLIAEEALKLGVRAKAHNIPS
CCEEEEECHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCC
LKLEYGTLVPMRYMNEDKHFKVVSISAFCTVHDFADSRKLGEAILKAIEQYDGTVAVLAS
EEEECCCCCCHHHCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
GSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVKLWREGQFKEFCNMLPEYADYCYGEGN
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
MHDTVMLLGMLGWDKYDGKVEFITELFPSSGTGQVNAVFPLPA
CHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2261999 [H]