Click here to switch to the map view.

The map label for this gene is sorC

Identifier: 30064698

GI number: 30064698

Start: 3518466

End: 3519413

Strand: Direct

Name: sorC

Synonym: S3636

Alternate gene names: 30064698

Gene position: 3518466-3519413 (Clockwise)

Preceding gene: 161486416

Following gene: 30064699

Centisome position: 76.5

GC content: 49.47

Gene sequence:

>948_bases
ATGGAAAACAGTGACGATATCCGTTTGATTGTGAAGATTGCCCAACTCTATTACGAACAGGATATGACGCAGGCGCAAAT
CGCGCGCGAACTGGGTATTTACCGCACCACCATCAGCCGCTTGCTTAAACGAGGCCGCGATCAGGGAATGGTCACCATCG
CCATCAACTATGACTACAACGAAAATCTCTGGCTGGAGCAGCAACTGAAGCAAAAGTTTGGCCTGAAAGACGTTGTGGTG
GTGTCGGGAAATGATGAGGATGAAGAGACTCAACTGGCGATGATGGGGTTACACGGCGCGCAACTGCTGGATCGCTTGCT
GGAGCCTGGCGATATTGTCGGTTTTTCCTGGGGTCGCGCGGTGAGCGCACTGGTTGAAAACTTGCCGCAGGCGGGGCAAT
CGCGGCAGTTAATCTGCGTACCAATTATTGGCGGACCGTCCGGTAAACTCGAAAGCCGCTATCATGTAAACACATTAACC
TACAGCGCGGCAGCGAAGCTGAAAGGGGAATCGCATCTCGCGGATTTTCCGGCTCTGCTGGATAACCCATTAATTCGTAA
TGGGATCATGCAGTCTCAGCACTTTAAAACCATCTCTGCCTACTGGGATAATCTGGATATCGCCCTGGTGGGAATTGGCT
CACCGGCCATTCGCGACGGCGCTAACTGGCATGCGTTTTATGGTGGTGAAGAGAGTGACGACCTGAATGCCCGCCAGGTT
GCTGGCGATATTTGCTCGCGCTTTTTTGATATTCACGGCGCAATGGTTGAAACGAATATGAGCGAAAAAACGCTCTCTAT
CGAAATGAATAAATTAAAGCAGGCGCGATATTCCATTGGCATTGCCATGAGTGAAGAAAAATACAGCGGAATTATTGGTG
CACTGCGTGGAAAATATATTAATTGTCTGGTAACGAATAGCAGCACAGCTGAACTATTACTGAAATAA

Upstream 100 bases:

>100_bases
AGAGTGAAAAATCGCTTTGAAAGGCCCTCATGATGGGGTTATATCAGATCAAGCGGTGAGAAAGCGTATTTGCACAAATG
TGCAGAACCAGGAGGCGGCA

Downstream 100 bases:

>100_bases
AAATCTTCCCGATGTTTACCGTAATAAAAATTACGGCGGGTCCCTATTATCTAAAATCAGGAGTCTGTTATGCAAACGTG
GTTAAATTTGCAGGATAAAA

Product: putative sor-operon regulator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRDQGMVTIAINYDYNENLWLEQQLKQKFGLKDVVV
VSGNDEDEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLT
YSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQV
AGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKYINCLVTNSSTAELLLK

Sequences:

>Translated_315_residues
MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRDQGMVTIAINYDYNENLWLEQQLKQKFGLKDVVV
VSGNDEDEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLT
YSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQV
AGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKYINCLVTNSSTAELLLK
>Mature_315_residues
MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRDQGMVTIAINYDYNENLWLEQQLKQKFGLKDVVV
VSGNDEDEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLT
YSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQV
AGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKYINCLVTNSSTAELLLK

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=318, Percent_Identity=29.2452830188679, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI87082414, Length=318, Percent_Identity=24.8427672955975, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34977; Mature: 34977

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRDQGMVTIAINYDYN
CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
ENLWLEQQLKQKFGLKDVVVVSGNDEDEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRA
CCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHCCCCCEEECCHHHH
VSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAKLKGESHLADFPALL
HHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEHHHHHCCCCCHHHHHHHHH
DNPLIRNGIMQSQHFKTISAYWDNLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQV
CCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCEEEEECCCCCCCCHHHHH
AGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKYI
HHHHHHHHHHHCCCEEECCCCCEEEEEEHHHHHHHHHHEEEEECCHHHHHHHHHHCCCEE
NCLVTNSSTAELLLK
EEEEECCCCCEEEEC
>Mature Secondary Structure
MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRDQGMVTIAINYDYN
CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
ENLWLEQQLKQKFGLKDVVVVSGNDEDEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRA
CCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHCCCCCEEECCHHHH
VSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAKLKGESHLADFPALL
HHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEHHHHHCCCCCHHHHHHHHH
DNPLIRNGIMQSQHFKTISAYWDNLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQV
CCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCEEEEECCCCCCCCHHHHH
AGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKYI
HHHHHHHHHHHCCCEEECCCCCEEEEEEHHHHHHHHHHEEEEECCHHHHHHHHHHCCCEE
NCLVTNSSTAELLLK
EEEEECCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]