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The map label for this gene is rhmA [H]

Identifier: 30063679

GI number: 30063679

Start: 2354106

End: 2354576

Strand: Reverse

Name: rhmA [H]

Synonym: S2460

Alternate gene names: 30063679

Gene position: 2354576-2354106 (Counterclockwise)

Preceding gene: 30063680

Following gene: 30063674

Centisome position: 51.19

GC content: 55.2

Gene sequence:

>471_bases
TTGTCCAACCCTCCCTACGGTGAGCGTGGTGTTGGGGCCAGTGTGGCACGGGCTGCGCGCTGGGGACGCATTGAGAATTA
CATGGCGCAAGTCAACGATTCGCTTTGTCTGTTAGTGCAGGTGGAAAGTAAAACGGCACTGGATAACCTGGACGAGATCC
TCGACGTCGAAGGGATTGATGGCGTGTTTATTGGACCAGCGGATCTTTCTGCGTCGTTGGGCTACCCGGATAACGCCGGG
CACCCGGAAGTGCAGCGAATTATTGAAACCAGCATTCGGCGGATCCGTGCTGCGGGTAAAGCGGCTGGTTTTCTGGCTGT
GGCTCCTGATATGGCGCAGCAATGCCTGGCGTGGGGAGCGAACTTTGTCGCTGTTGGCGTTGACACGATGCTCTACAGCG
ATGCCCTGGATCAACGACTGGCGATGTTTAAATCAGGCAAAAATGGGCCACGCATAAAAGGTAGTTATTGA

Upstream 100 bases:

>100_bases
GCATGGCTGGATTGAGGTTGTTGAGTCCATGACTTTATCCGTCTGATTTCGCCACTCTGTGCCGGTTTACTGCACCGGCA
CATTCCCCCTCCGGCAAAAT

Downstream 100 bases:

>100_bases
TATCAAAGGCCCATGGGGATCGGCTGTGGGCCTGTGTTAATTAGTGGTTATTCGCTGCCAGATCGGCTTCGCTTAGCTGG
GTGGCCGCGAGCACTTGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: KDR aldolase; 2-dehydro-3-deoxyrhamnonate aldolase [H]

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSNPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAG
HPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY

Sequences:

>Translated_156_residues
MSNPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAG
HPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY
>Mature_155_residues
SNPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGH
PEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY

Specific function: Catalyzes the reversible retro-aldol cleavage of 2-keto- 3-deoxy-L-rhamnonate (KDR) to pyruvate and lactaldehyde [H]

COG id: COG3836

COG function: function code G; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HpcH/HpaI aldolase family. KDR aldolase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788578, Length=153, Percent_Identity=100, Blast_Score=315, Evalue=6e-88,
Organism=Escherichia coli, GI1789514, Length=141, Percent_Identity=44.6808510638298, Blast_Score=123, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005000
- InterPro:   IPR015813 [H]

Pfam domain/function: PF03328 HpcH_HpaI [H]

EC number: NA

Molecular weight: Translated: 16673; Mature: 16542

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGID
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCC
GVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGA
EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCC
NFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY
CEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SNPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGID
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCC
GVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGA
EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCC
NFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY
CEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA