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The map label for this gene is ompD [H]

Identifier: 30063399

GI number: 30063399

Start: 2010943

End: 2011830

Strand: Direct

Name: ompD [H]

Synonym: S2105

Alternate gene names: 30063399

Gene position: 2010943-2011830 (Clockwise)

Preceding gene: 30063394

Following gene: 30063402

Centisome position: 43.72

GC content: 45.27

Gene sequence:

>888_bases
ATGACTCTGAGGTGTCTGTTAAACCCGTGGCGATTCAGTGAGCGCATTCTGACCGACCGTGAAAATGGTGAAAAAGGCGA
TAATTCTCAAGATACCTCTTATGCCCGTGTAGGCGTGAAAGGTGAAACTCAGATCAACCCTGAAATGACTGGTTACGGTC
AGTTTGAACTAGACCTGGAAGCATCAAACAGACACAACCCTGACCAAACTCGTTTGGCATATGCTGGTTTGAGTTACAAA
GATTTTGGTTCATTCGACTACAGTCGTAATGTCGGTGTCGCGTATGATGCAGAAGCATTTACTGATATGTTTGTTGAGTG
GGGCGGTGACTCATGGGCTGGTACTGACCTGTTCATGACCAACCGTACCAACGGTGTTGCAACCTATCGTAACACAGATT
TCTTTGGCATGGTTGAAGGTCTAAATTTTGCTCTGCAATATCAGGGTAAAAATGAAGGTACAGGCAACTACAAAGCAAAT
GGCGATGGCCATGGTTTATCTGCAACTTACACTATTGACGGTTTCTCATTTGCTGGTGCTTATGCAAACTCTGACCGTAC
TGATTGGCAGTCTGGTGATGGTAAAGGCGAAAGAGCCGAAGTTTGGGCGTTGTCAACAAAATATGACGCTAACAATGTTT
ATGCTGCTGTGATGTACGGTGAATCTCACAACATGAATTCCGACGACGGTGATGTTGTGAACAAAACACAAAACTTCGAA
GCTGTTCTGCAATATCAGTTCGACTTTGGTCTGCGTCCATCCATCGGTTACTCCTATTCTAAAGCACTGGACGTAGCAGG
TTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCG
AGCGATAA

Upstream 100 bases:

>100_bases
ACAGAATAACCGCGATCAACAACCTGTTTGACTGCTTCAGTTTTAAACTCTTCGGGATAACGCTTACCGCTCATGGGCAC
CTCTCTTTAAGCCATCTTAA

Downstream 100 bases:

>100_bases
CCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGG
TTTGGGCATGATACTGATGT

Product: putative outer membrane pore protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MTLRCLLNPWRFSERILTDRENGEKGDNSQDTSYARVGVKGETQINPEMTGYGQFELDLEASNRHNPDQTRLAYAGLSYK
DFGSFDYSRNVGVAYDAEAFTDMFVEWGGDSWAGTDLFMTNRTNGVATYRNTDFFGMVEGLNFALQYQGKNEGTGNYKAN
GDGHGLSATYTIDGFSFAGAYANSDRTDWQSGDGKGERAEVWALSTKYDANNVYAAVMYGESHNMNSDDGDVVNKTQNFE
AVLQYQFDFGLRPSIGYSYSKALDVAGWICPYISRHLLSLNPLQARCRRYSRGER

Sequences:

>Translated_295_residues
MTLRCLLNPWRFSERILTDRENGEKGDNSQDTSYARVGVKGETQINPEMTGYGQFELDLEASNRHNPDQTRLAYAGLSYK
DFGSFDYSRNVGVAYDAEAFTDMFVEWGGDSWAGTDLFMTNRTNGVATYRNTDFFGMVEGLNFALQYQGKNEGTGNYKAN
GDGHGLSATYTIDGFSFAGAYANSDRTDWQSGDGKGERAEVWALSTKYDANNVYAAVMYGESHNMNSDDGDVVNKTQNFE
AVLQYQFDFGLRPSIGYSYSKALDVAGWICPYISRHLLSLNPLQARCRRYSRGER
>Mature_294_residues
TLRCLLNPWRFSERILTDRENGEKGDNSQDTSYARVGVKGETQINPEMTGYGQFELDLEASNRHNPDQTRLAYAGLSYKD
FGSFDYSRNVGVAYDAEAFTDMFVEWGGDSWAGTDLFMTNRTNGVATYRNTDFFGMVEGLNFALQYQGKNEGTGNYKANG
DGHGLSATYTIDGFSFAGAYANSDRTDWQSGDGKGERAEVWALSTKYDANNVYAAVMYGESHNMNSDDGDVVNKTQNFEA
VLQYQFDFGLRPSIGYSYSKALDVAGWICPYISRHLLSLNPLQARCRRYSRGER

Specific function: Uptake Of Inorganic Phosphate, Phosphorylated Compounds, And Some Other Negatively Charged Solutes. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=245, Percent_Identity=59.1836734693878, Blast_Score=271, Evalue=5e-74,
Organism=Escherichia coli, GI1787641, Length=255, Percent_Identity=54.5098039215686, Blast_Score=249, Evalue=2e-67,
Organism=Escherichia coli, GI1787160, Length=250, Percent_Identity=52.8, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1788544, Length=252, Percent_Identity=49.6031746031746, Blast_Score=219, Evalue=2e-58,

Paralogues:

None

Copy number: 794 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 33066; Mature: 32935

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRCLLNPWRFSERILTDRENGEKGDNSQDTSYARVGVKGETQINPEMTGYGQFELDLE
CEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCEEEEEEE
ASNRHNPDQTRLAYAGLSYKDFGSFDYSRNVGVAYDAEAFTDMFVEWGGDSWAGTDLFMT
CCCCCCCCHHEEEEECCCHHHCCCCCCCCCCCEEECHHHHHHHHEEECCCCCCCCEEEEE
NRTNGVATYRNTDFFGMVEGLNFALQYQGKNEGTGNYKANGDGHGLSATYTIDGFSFAGA
CCCCCEEEEECCCCEEEECCCEEEEEECCCCCCCCCEECCCCCCCEEEEEEECCCEEECC
YANSDRTDWQSGDGKGERAEVWALSTKYDANNVYAAVMYGESHNMNSDDGDVVNKTQNFE
CCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCE
AVLQYQFDFGLRPSIGYSYSKALDVAGWICPYISRHLLSLNPLQARCRRYSRGER
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
TLRCLLNPWRFSERILTDRENGEKGDNSQDTSYARVGVKGETQINPEMTGYGQFELDLE
EEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCEEEEEEE
ASNRHNPDQTRLAYAGLSYKDFGSFDYSRNVGVAYDAEAFTDMFVEWGGDSWAGTDLFMT
CCCCCCCCHHEEEEECCCHHHCCCCCCCCCCCEEECHHHHHHHHEEECCCCCCCCEEEEE
NRTNGVATYRNTDFFGMVEGLNFALQYQGKNEGTGNYKANGDGHGLSATYTIDGFSFAGA
CCCCCEEEEECCCCEEEECCCEEEEEECCCCCCCCCEECCCCCCCEEEEEEECCCEEECC
YANSDRTDWQSGDGKGERAEVWALSTKYDANNVYAAVMYGESHNMNSDDGDVVNKTQNFE
CCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCE
AVLQYQFDFGLRPSIGYSYSKALDVAGWICPYISRHLLSLNPLQARCRRYSRGER
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA