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The map label for this gene is ompC [H]

Identifier: 30063402

GI number: 30063402

Start: 2013047

End: 2013256

Strand: Direct

Name: ompC [H]

Synonym: S2108

Alternate gene names: 30063402

Gene position: 2013047-2013256 (Clockwise)

Preceding gene: 30063399

Following gene: 30063403

Centisome position: 43.77

GC content: 41.43

Gene sequence:

>210_bases
TTGTCTGGAGATTCAGGGGGCCAGTCTACAGGTTACAAAGATTCTGATCGTCTGAACTATATTGAAATCGGTACCTGGTA
TTACTTCAATAAGAATATGAACATATATACCGCTTATCAGATCAACCTGCTTGATAAGAGTGATTATGTTCTCGCTCATG
GACTGAACACCGACGACCAACTGGCAGTTGGTATCGTCTACCAGTTCTAA

Upstream 100 bases:

>100_bases
GCCGTCTGCGTTTCTCCGGTCCTAAGACATCAATCATCTGCTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATC
ACTTAAATAAGTGATATTGG

Downstream 100 bases:

>100_bases
TCAGCCAACGCGCCGAGGCGTGTTACTGTAAAACATAACACCAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTA
TTGGCATTTCATCTCCATCT

Product: putative outer membrane protein

Products: NA

Alternate protein names: Porin ompC [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSGDSGGQSTGYKDSDRLNYIEIGTWYYFNKNMNIYTAYQINLLDKSDYVLAHGLNTDDQLAVGIVYQF

Sequences:

>Translated_69_residues
MSGDSGGQSTGYKDSDRLNYIEIGTWYYFNKNMNIYTAYQINLLDKSDYVLAHGLNTDDQLAVGIVYQF
>Mature_68_residues
SGDSGGQSTGYKDSDRLNYIEIGTWYYFNKNMNIYTAYQINLLDKSDYVLAHGLNTDDQLAVGIVYQF

Specific function: Forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=59, Percent_Identity=52.5423728813559, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787641, Length=62, Percent_Identity=51.6129032258064, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 7871; Mature: 7740

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGDSGGQSTGYKDSDRLNYIEIGTWYYFNKNMNIYTAYQINLLDKSDYVLAHGLNTDDQ
CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCCC
LAVGIVYQF
EEEEEEEEC
>Mature Secondary Structure 
SGDSGGQSTGYKDSDRLNYIEIGTWYYFNKNMNIYTAYQINLLDKSDYVLAHGLNTDDQ
CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCCC
LAVGIVYQF
EEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2684785; 3412902; 11677608; 12644504; 10405180 [H]