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The map label for this gene is ycfM

Identifier: 30062638

GI number: 30062638

Start: 1153248

End: 1153889

Strand: Direct

Name: ycfM

Synonym: S1189

Alternate gene names: 30062638

Gene position: 1153248-1153889 (Clockwise)

Preceding gene: 30062637

Following gene: 30062639

Centisome position: 25.07

GC content: 56.54

Gene sequence:

>642_bases
ATGACAAAAATGAGTCGCTACGCCTTGATTACCGCGCTGGCGATGTTTCTCGCCGGGTGTGTGGGGCAACGTGAACCTGC
ACCGGTAGAAGAAGTGAAACCAGCGCCGGAACAACCAGCCGAGCCACAACAGCCTGTCCCCACAGTGCCCTCGGTGCCGA
CGATCCCGCAGCAGCCAGGCCCAATTGAGCACGAAGATCGAACGGCACCGCCTGCGCCGCATATTCGCCATTATGACTGG
AATGGCGCAATGCAGCCGATGGTCAGTAAGATGCTTGGGGCTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAG
CGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGAAACGCTGCGAAATGCGCTGGCTAATAACGGGA
AATTTACCCTGGTTTCCGCCCAGCAACTGTCGATGGCTAAGCAACAGTTAGGTTTGTCGCCGCAGGACAGTTTAGGCACC
CGTAGTAAAGCCATAGGCATTGCCCGCAATGTCGGCGCTCATTACGTGCTGTACTCCTGCGCCTCTGGCAACGTTAACGC
TCCGACCCTACAAATGCAGCTGATGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTAAAGGTGCCGTTTCGCAGCAAT
AA

Upstream 100 bases:

>100_bases
CCATTCCCGCACATTCGGCGGTAACGCTGTACGGCAGCGCCAATTTTCTGGGGGCGCACAAAGTCAGACTTTATCTATAT
TTGTAAAGGGGTGAATCTTG

Downstream 100 bases:

>100_bases
TCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTTTCATCCCGTCACGACGTTTAATAGTGGGCTTAGTG
GCGGTAGTTTTCTCATTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDRTAPPAPHIRHYDW
NGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
RSKAIGIARNVGAHYVLYSCASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ

Sequences:

>Translated_213_residues
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDRTAPPAPHIRHYDW
NGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
RSKAIGIARNVGAHYVLYSCASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
>Mature_212_residues
TKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDRTAPPAPHIRHYDWN
GAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTR
SKAIGIARNVGAHYVLYSCASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ

Specific function: Unknown

COG id: COG3417

COG function: function code R; Collagen-binding surface adhesin SpaP (antigen I/II family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787348, Length=213, Percent_Identity=99.0610328638498, Blast_Score=430, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014094 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22560; Mature: 22429

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PIEHEDRTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAE
CCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHH
ATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSC
HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHCCCEEEEEEE
ASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
CCCCCCCCEEEEEEEEEECCCEEECCCCCCCCC
>Mature Secondary Structure 
TKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPG
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PIEHEDRTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAE
CCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHH
ATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSC
HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHCCCEEEEEEE
ASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
CCCCCCCCEEEEEEEEEECCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]