| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is uup
Identifier: 30062486
GI number: 30062486
Start: 1000996
End: 1002903
Strand: Direct
Name: uup
Synonym: S1015
Alternate gene names: 30062486
Gene position: 1000996-1002903 (Clockwise)
Preceding gene: 30062485
Following gene: 30062487
Centisome position: 21.76
GC content: 52.15
Gene sequence:
>1908_bases ATGTCATTAATCAGTATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGA AGATAACGAACGTGTTTGTCTGGTGGGCCGCAACGGCGCAGGAAAATCGACGTTAATGAAAATCCTCAACCGTGAACAAG GGCTGGATGACGGTCGCATTATTTATGAGCAAGATTTGATTGTAGCTCGTCTGCAACAGGATCCGCCGCGTAACGTTGAG GGTAGCGTTTATGATTTCGTTGCCGAAGGCATTGAAGAACAAGCGGAATATCTGAAACGCTATCACGATATTTCGCGCCT GGTGATGAACGACCCGAGCGAGAAAAATCTCAACGAACTGGCGAAGGTTCAGGAACAGCTGGATCACCACAACCTGTGGC AGCTGGAAAACCGCATCAACGAAGTGCTGGCGCAACTGGGGTTAGATCCTAACGTTGCGCTGTCGTCGCTTTCCGGCGGC TGGTTGCGTAAAGCGGCATTAGGACGCGCGCTGGTGAGCAATCCGCGCGTATTGCTGCTGGACGAACCGACTAACCATCT GGATATCGAAACCATCGACTGGCTGGAGGGGTTCCTTAAAACCTTCAATGGGACGATTATTTTCATCTCCCACGACCGTT CGTTTATCCGCAATATGGCGACGCGCATTGTTGATCTCGATCGCGGCAAGCTGGTGACCTATCCAGGGAATTACGACCAG TACCTGCAGGAAAAAGAAGAAGCCCTGCGCGTGGAAGAACTACAAAATGCCGAGTTCGATCTCAAACTGGCGCAGGAAGA AGTGTGGATTCGCCAGGGGATCAAAGCACGCCGTACCCGTAATGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCG AACGTGGTGAACGTCGCGAAGTGATGGGTACCGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAGATCGTTTTC GAAATGGAAGACGTTTGCTACCAGGTTAACGGTAAGCAACTGGTGAAAGATTTTTCTGCCCAGGTTCTACGTGGCGACAA AATTGCCCTGATTGGTCCGAATGGGTGCGGCAAAACCACGCTGCTGAAACTGATGCTCGGTCAGCTTCAAGCGGACAGCG GGCGTATTCACGTTGGCACCAAACTGGAAGTGGCTTATTTCGATCAGCACCGCGCGGAACTGGATCCCGATAAAACGGTG ATGGATAACCTTGCCGAAGGTAAGCAAGAGGTGATGGTTAATGGCAAGCCACGCCACGTATTGGGCTATTTGCAGGACTT TCTGTTCCATCCGAAACGGGCGATGACGCCAGTACGTGCGTTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTT TGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAA GAACTGATCGACAGCTATCAGGGCACGGTATTGCTGGTTAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATG CTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTTGGCGGTTATCATGATGCCCGTGGTCAGCAAGAACAATATG TGGCACTCAAACAGCCTGCGGTGAAAAAAAGCGAAGAAGCCGCCGCGCCAAAAGCAGAAACTGTAAAACGCAGCAGTAGC AAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCT ACAGACGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTG CAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCTGA
Upstream 100 bases:
>100_bases AAGCACAAGAAATTACGCAAAAAACGCTCTCCCAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACC GCAGCCTGAAAGGAATAGTA
Downstream 100 bases:
>100_bases TCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAAC CAACACTTTGTTAGTCATCT
Product: ABC transporter ATPase component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 635; Mature: 634
Protein sequence:
>635_residues MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVE GSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGG WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQ YLQEKEEALRVEELQNAEFDLKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERGERREVMGTAKMQVEEASRSGKIVF EMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTV MDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRAFSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE ELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKSEEAAAPKAETVKRSSS KLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG
Sequences:
>Translated_635_residues MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVE GSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGG WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQ YLQEKEEALRVEELQNAEFDLKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERGERREVMGTAKMQVEEASRSGKIVF EMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTV MDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRAFSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE ELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKSEEAAAPKAETVKRSSS KLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG >Mature_634_residues SLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEG SVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGGW LRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQY LQEKEEALRVEELQNAEFDLKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERGERREVMGTAKMQVEEASRSGKIVFE MEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVM DNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRAFSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEE LIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKSEEAAAPKAETVKRSSSK LSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=546, Percent_Identity=30.7692307692308, Blast_Score=226, Evalue=6e-59, Organism=Homo sapiens, GI27881506, Length=517, Percent_Identity=30.3675048355899, Blast_Score=200, Evalue=3e-51, Organism=Homo sapiens, GI10947137, Length=517, Percent_Identity=30.3675048355899, Blast_Score=200, Evalue=3e-51, Organism=Homo sapiens, GI10947135, Length=532, Percent_Identity=29.5112781954887, Blast_Score=182, Evalue=8e-46, Organism=Homo sapiens, GI69354671, Length=532, Percent_Identity=29.5112781954887, Blast_Score=182, Evalue=9e-46, Organism=Homo sapiens, GI42741659, Length=316, Percent_Identity=27.8481012658228, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI9961250, Length=390, Percent_Identity=24.8717948717949, Blast_Score=70, Evalue=8e-12, Organism=Homo sapiens, GI4505771, Length=390, Percent_Identity=24.8717948717949, Blast_Score=70, Evalue=8e-12, Organism=Homo sapiens, GI9961252, Length=390, Percent_Identity=24.8717948717949, Blast_Score=70, Evalue=8e-12, Organism=Escherichia coli, GI1787182, Length=635, Percent_Identity=99.2125984251969, Blast_Score=1289, Evalue=0.0, Organism=Escherichia coli, GI2367384, Length=516, Percent_Identity=34.6899224806202, Blast_Score=289, Evalue=5e-79, Organism=Escherichia coli, GI1787041, Length=505, Percent_Identity=32.8712871287129, Blast_Score=255, Evalue=5e-69, Organism=Escherichia coli, GI1789751, Length=632, Percent_Identity=28.7974683544304, Blast_Score=243, Evalue=4e-65, Organism=Escherichia coli, GI1788506, Length=571, Percent_Identity=24.3432574430823, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI1788165, Length=192, Percent_Identity=31.7708333333333, Blast_Score=83, Evalue=6e-17, Organism=Escherichia coli, GI1787029, Length=224, Percent_Identity=27.6785714285714, Blast_Score=76, Evalue=7e-15, Organism=Escherichia coli, GI1788225, Length=226, Percent_Identity=26.5486725663717, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI87081791, Length=203, Percent_Identity=29.5566502463054, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1789891, Length=224, Percent_Identity=27.2321428571429, Blast_Score=70, Evalue=6e-13, Organism=Escherichia coli, GI1787089, Length=275, Percent_Identity=24, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI87081709, Length=236, Percent_Identity=24.5762711864407, Blast_Score=66, Evalue=6e-12, Organism=Escherichia coli, GI1787370, Length=190, Percent_Identity=27.8947368421053, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1787105, Length=224, Percent_Identity=29.4642857142857, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1787712, Length=192, Percent_Identity=30.2083333333333, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1788761, Length=206, Percent_Identity=28.6407766990291, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1786319, Length=202, Percent_Identity=29.7029702970297, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1787143, Length=247, Percent_Identity=27.1255060728745, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI87082267, Length=215, Percent_Identity=27.906976744186, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1786563, Length=198, Percent_Identity=30.3030303030303, Blast_Score=63, Evalue=5e-11, Organism=Escherichia coli, GI1787164, Length=161, Percent_Identity=33.5403726708075, Blast_Score=63, Evalue=7e-11, Organism=Escherichia coli, GI1790467, Length=210, Percent_Identity=26.1904761904762, Blast_Score=62, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17555318, Length=523, Percent_Identity=29.6367112810707, Blast_Score=204, Evalue=9e-53, Organism=Caenorhabditis elegans, GI17559834, Length=570, Percent_Identity=28.5964912280702, Blast_Score=204, Evalue=2e-52, Organism=Caenorhabditis elegans, GI17553372, Length=531, Percent_Identity=30.8851224105461, Blast_Score=192, Evalue=3e-49, Organism=Caenorhabditis elegans, GI212646699, Length=239, Percent_Identity=28.4518828451883, Blast_Score=77, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17569143, Length=267, Percent_Identity=28.8389513108614, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17558664, Length=237, Percent_Identity=26.1603375527426, Blast_Score=69, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6320874, Length=526, Percent_Identity=29.467680608365, Blast_Score=207, Evalue=5e-54, Organism=Saccharomyces cerevisiae, GI6321121, Length=538, Percent_Identity=29.9256505576208, Blast_Score=201, Evalue=2e-52, Organism=Saccharomyces cerevisiae, GI6323278, Length=380, Percent_Identity=28.1578947368421, Blast_Score=137, Evalue=6e-33, Organism=Saccharomyces cerevisiae, GI6324314, Length=446, Percent_Identity=26.2331838565022, Blast_Score=129, Evalue=1e-30, Organism=Saccharomyces cerevisiae, GI6325030, Length=385, Percent_Identity=26.4935064935065, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI24666836, Length=532, Percent_Identity=31.5789473684211, Blast_Score=230, Evalue=2e-60, Organism=Drosophila melanogaster, GI24642252, Length=534, Percent_Identity=29.0262172284644, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI18859989, Length=534, Percent_Identity=29.0262172284644, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI24641342, Length=547, Percent_Identity=29.4332723948812, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI24659289, Length=255, Percent_Identity=30.5882352941176, Blast_Score=76, Evalue=9e-14, Organism=Drosophila melanogaster, GI17136662, Length=235, Percent_Identity=28.936170212766, Blast_Score=72, Evalue=8e-13, Organism=Drosophila melanogaster, GI116007184, Length=197, Percent_Identity=26.9035532994924, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI221500365, Length=197, Percent_Identity=26.9035532994924, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI281363262, Length=217, Percent_Identity=24.4239631336406, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI24653245, Length=217, Percent_Identity=24.4239631336406, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 72086; Mature: 71955
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRI CCEEECCCCEEECCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCE IYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNEL EEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH AKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGGWLRKAALGRALVSNPRVLLL HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEE DEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQ ECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEECCCCEEEECCCCHHH YLQEKEEALRVEELQNAEFDLKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERGERRE HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHCCHHH VMGTAKMQVEEASRSGKIVFEMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKTT HHHHHHHHHHHHCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHH LLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAEGKQEVMVNGKPRHV HHHHHHHHHCCCCCEEEECCEEEEEEEHHHHCCCCCCHHHHHHHHCCCHHEEECCCCHHH LGYLQDFLFHPKRAMTPVRAFSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE HHHHHHHHHCCHHHCCHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH ELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPA HHHHHHCCEEEEEECCHHHHHCCHHEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHCCCC VKKSEEAAAPKAETVKRSSSKLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQP CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH HEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRI CEEECCCCEEECCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCE IYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNEL EEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH AKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGGWLRKAALGRALVSNPRVLLL HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEE DEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQ ECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEECCCCEEEECCCCHHH YLQEKEEALRVEELQNAEFDLKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERGERRE HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHCCHHH VMGTAKMQVEEASRSGKIVFEMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKTT HHHHHHHHHHHHCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHH LLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAEGKQEVMVNGKPRHV HHHHHHHHHCCCCCEEEECCEEEEEEEHHHHCCCCCCHHHHHHHHCCCHHEEECCCCHHH LGYLQDFLFHPKRAMTPVRAFSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE HHHHHHHHHCCHHHCCHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH ELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPA HHHHHHCCEEEEEECCHHHHHCCHHEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHCCCC VKKSEEAAAPKAETVKRSSSKLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQP CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH HEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Endonuclease; Excision [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 9139905; 7751275 [H]