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The map label for this gene is ybgQ

Identifier: 30062119

GI number: 30062119

Start: 600974

End: 603433

Strand: Direct

Name: ybgQ

Synonym: S0592

Alternate gene names: 30062119

Gene position: 600974-603433 (Clockwise)

Preceding gene: 30062118

Following gene: 30062120

Centisome position: 13.07

GC content: 49.39

Gene sequence:

>2460_bases
ATGGACACCGTGAATATTTATCGACTCTCTTTTGTATCCTGCCTGGTCGTGGCGATGCCTTGCGCATTGGCGGTCGAATT
CAATCTGAATGTTCTCGATAAATCAATGCGCGACCGCATTGATATTTCATTATTAAAGGAAAAAGGAGTCATTGCTCCCG
GTGAGTATTTTGTTAGCGTTGCGGTAAATAATAACCAAATCAGTAACGAGCAAAAGATTAACTGGCACAAAAATGACGAT
AAAACCATTCCGTGCATCAATGATTTACTGGTCGATAAATTTGGCTTAAAACCTGAAGTCCGTCAGTCGTTACCATTGAT
AAATCAGTGCGTCGATTTTAGCTCCCGACCTGAAATGCTCTTCAATTTCGATCAAGCCAATCAGCAACTGAATATTAGTA
TTCCGCAAGCCTGGCTGGCGTGGCACTCAGAAAACTGGACCCCACCCTCCACATGGAAAGAAGGTGTCGCCGGTGTCCTG
ATGGATTACAACTTGTTTGCCAGCAGCTACCGCCCACAGGATGGCAGCAGCAGCACTAATCTTAACGCCTATGGAACAGC
CGGAATCAACACGGGGGCATGGCGCTTACGCAGTGATTATCAGTTGAATCATACTGATAGCGATGATAACCATGAACAGT
CAGGCGAAATATCACGTACCTATCTTTTTCGCCCGTTACCGCAATTAGGTTCAAAATTAACCCTCGGCGAAACGGATTTT
AGTCCCAATATTTTCGACGGTTTTTCTTATACCGGCGCGGCACTGGCAAGTGACGATCGAATGTTGCCATGGGAACTACG
CGGCTACGCCCCACAAATTAGCGGTATTGCACAGACCAATGCCACGGTGACGATCAGTCAATCAGGCCGCGTCATTTACC
AGAAAAAAGTCCCACCAGGCCCATTTATCATTGACGACCTTAATCAGTCTGTTCAGGGCACACTGGATGTCAAAGTGACG
GAAGAAGATGGTCGGGTGAACAATTTCCAGGTTTCAGCAGCATCGACGCCCTTCCTGACTCGTCAGGGACAGGTTCGCTA
TAAACTGGCCGCGGGTCAGCCACGGCCCTCCATGTCACATCAAACTGAAAATGAAACCTTTTTTAGCAATGAAGTTTCCT
GGGGGATGCTGTCAAACACCTCGCTGTACAGCGGCCTGCTGCTTTCTGGTGATGACTACCATTCTGCCGCAATGGGTATT
GGGCAAAATATGCTGTGGCTTGGTGCGCTGTCGTTTGATGTCACGTGGGCCAGTAGCCATTTTGATACTCAGCAGGACGA
GCGGGGCTTAAGCTACCGTTTTAATTACAGCAAACAAGTGGATGCCACTAACAGCACGATTTCCCTCGCCGCTTATCGTT
TCTCCGATCGTCATTTTCACAGCTACGCCAACTATCTGGATCACAAATACAACGACAGCGATGCGCAGGACGAAAAACAG
ACGATCAGCTTATCTGTGGGCCAACCGATTACCCCACTAAACCTCAATCTTTACGCCAACCTGCTACATCAAACCTGGTG
GAATGCAGACGCCTCCACGACCGCCAACATCACGGCAGGTTTTAATGTTGATATTGGTGACTGGAGAGATATCTCTATTT
CTACGTCATTCAATACAACCCATTACGAAGATAAAGATCGCGACAACCAGATTTACCTGTCGATTTCGCTCCCCTTCGGT
AACGGTGGTCGGGTTGGCTATGACATGCAAAACAGTAGCCACAGCACCACACACCGCATGTCGTGGAACGATACGCTGGA
TGAACGTAATAGCTGGGGCATGTCTGCCGGACTGCAATCCGACCGTCCTGACAATGGAGCCCAGGTGAGCGGTAACTATC
AGCACCTGAGTTCAGCGGGTGAGTGGGATATTTCTGGTACCTATGCCGCCAATGATTACAGTTCCGTCAGCAGCAGCTGG
AGCGGTTCTTTCACCGCAACCCAATATGGTGCAGCGTTTCATCGCCGCAGCTCCACCAATGAACCACGCCTGATGGTCAG
CACCGATGGCGTGGCAGATATTCCGGTTCAGGGCAATCTCGACTACACCAACCATTTTGGCATTGCGGTGGTGCCGTTGA
TTTCCAGTTACCAGCCTTCCACCGTGGCGGTGAACATGAATGACTTACCCGACGGCGTAACAGTTGCAGAAAACGTTATC
AAAGAAACGTGGATTGAAGGCGCGATAGGTTACAAATCACTGGCTTCCCGTTCCGGTAAAGACGTTAACGTCATCATTCG
CAACGCCAGCGGTCAGTTTCCTCCCCTCGGAGCGGATATCCGCCAGGATGACAGCGGCATTAGCGTGGGGATGGTTGGCG
AGGAAGGACATGCCTGGTTAAGCGGAGTCGCTGAAAATCAAAAGTTTACCGTGGTCTGGGGTGATAGCCAGCATTGCTCG
CTCCATCTTCCTGAACATATGGAAGACACCGCAAATCGCCTGATTTTACCTTGTCATTAA

Upstream 100 bases:

>100_bases
CGCCAGGCGCAGTTACGGCGAATGCAACCTACGTGCTGGATTATAAATAAGTATTACTTTGGCGGCGCTATCGCCGCCTT
TCATAAAATATTTATCAGGT

Downstream 100 bases:

>100_bases
TTAAGGAAATGAAAATGACATTTATGAAAGGACTACCCCTTTTGTTGTTGGTTGCCAGTCTGTGCAGCCACGCTGCACTA
CAACCCGATCGCACTCGTAT

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 819; Mature: 819

Protein sequence:

>819_residues
MDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNQISNEQKINWHKNDD
KTIPCINDLLVDKFGLKPEVRQSLPLINQCVDFSSRPEMLFNFDQANQQLNISIPQAWLAWHSENWTPPSTWKEGVAGVL
MDYNLFASSYRPQDGSSSTNLNAYGTAGINTGAWRLRSDYQLNHTDSDDNHEQSGEISRTYLFRPLPQLGSKLTLGETDF
SPNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTISQSGRVIYQKKVPPGPFIIDDLNQSVQGTLDVKVT
EEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYSGLLLSGDDYHSAAMGI
GQNMLWLGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYLDHKYNDSDAQDEKQ
TISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGDWRDISISTSFNTTHYEDKDRDNQIYLSISLPFG
NGGRVGYDMQNSSHSTTHRMSWNDTLDERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDISGTYAANDYSSVSSSW
SGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVI
KETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWLSGVAENQKFTVVWGDSQHCS
LHLPEHMEDTANRLILPCH

Sequences:

>Translated_819_residues
MDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNQISNEQKINWHKNDD
KTIPCINDLLVDKFGLKPEVRQSLPLINQCVDFSSRPEMLFNFDQANQQLNISIPQAWLAWHSENWTPPSTWKEGVAGVL
MDYNLFASSYRPQDGSSSTNLNAYGTAGINTGAWRLRSDYQLNHTDSDDNHEQSGEISRTYLFRPLPQLGSKLTLGETDF
SPNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTISQSGRVIYQKKVPPGPFIIDDLNQSVQGTLDVKVT
EEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYSGLLLSGDDYHSAAMGI
GQNMLWLGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYLDHKYNDSDAQDEKQ
TISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGDWRDISISTSFNTTHYEDKDRDNQIYLSISLPFG
NGGRVGYDMQNSSHSTTHRMSWNDTLDERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDISGTYAANDYSSVSSSW
SGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVI
KETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWLSGVAENQKFTVVWGDSQHCS
LHLPEHMEDTANRLILPCH
>Mature_819_residues
MDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNQISNEQKINWHKNDD
KTIPCINDLLVDKFGLKPEVRQSLPLINQCVDFSSRPEMLFNFDQANQQLNISIPQAWLAWHSENWTPPSTWKEGVAGVL
MDYNLFASSYRPQDGSSSTNLNAYGTAGINTGAWRLRSDYQLNHTDSDDNHEQSGEISRTYLFRPLPQLGSKLTLGETDF
SPNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTISQSGRVIYQKKVPPGPFIIDDLNQSVQGTLDVKVT
EEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYSGLLLSGDDYHSAAMGI
GQNMLWLGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYLDHKYNDSDAQDEKQ
TISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGDWRDISISTSFNTTHYEDKDRDNQIYLSISLPFG
NGGRVGYDMQNSSHSTTHRMSWNDTLDERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDISGTYAANDYSSVSSSW
SGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVI
KETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWLSGVAENQKFTVVWGDSQHCS
LHLPEHMEDTANRLILPCH

Specific function: Could be involved in the export and assembly of the putative ybgD fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=816, Percent_Identity=95.4656862745098, Blast_Score=1565, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=878, Percent_Identity=28.4738041002278, Blast_Score=285, Evalue=8e-78,
Organism=Escherichia coli, GI1789533, Length=789, Percent_Identity=29.531051964512, Blast_Score=270, Evalue=2e-73,
Organism=Escherichia coli, GI1786744, Length=781, Percent_Identity=28.2970550576184, Blast_Score=262, Evalue=7e-71,
Organism=Escherichia coli, GI1786332, Length=875, Percent_Identity=26.5142857142857, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI1787172, Length=873, Percent_Identity=26.3459335624284, Blast_Score=246, Evalue=5e-66,
Organism=Escherichia coli, GI1788427, Length=805, Percent_Identity=25.9627329192547, Blast_Score=199, Evalue=5e-52,
Organism=Escherichia coli, GI1789610, Length=807, Percent_Identity=23.7918215613383, Blast_Score=105, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 90692; Mature: 90692

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSV
CCCEEEHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCEEEEECCCCCCCCCEEEEE
AVNNNQISNEQKINWHKNDDKTIPCINDLLVDKFGLKPEVRQSLPLINQCVDFSSRPEML
EECCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCHHHHHHCHHHHHHHCCCCCCCEE
FNFDQANQQLNISIPQAWLAWHSENWTPPSTWKEGVAGVLMDYNLFASSYRPQDGSSSTN
EEECCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHEEEEEHHHHHCCCCCCCCCCCCC
LNAYGTAGINTGAWRLRSDYQLNHTDSDDNHEQSGEISRTYLFRPLPQLGSKLTLGETDF
EEEEEECCCCCCEEEEECCEEECCCCCCCCCCCCCCCEEEEEECCHHHHCCEEEECCCCC
SPNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTISQSGRVIYQKKVPPG
CCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCCCCEEECCCEEEEECCCCEEEEECCCCC
PFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSH
CEEEECCCCCCCEEEEEEEECCCCCCCEEEEECCCCCEEECCCCEEEEEECCCCCCCCCC
QTENETFFSNEVSWGMLSNTSLYSGLLLSGDDYHSAAMGIGQNMLWLGALSFDVTWASSH
CCCCCEEECCCCCCCEEECCCHHCEEEECCCCHHHHHHHCCCCEEEEEEEEEEEEECCCC
FDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYLDHKYNDSDAQDEKQ
CCCCHHCCCCEEEECCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCE
TISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGDWRDISISTSFNTT
EEEEECCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCC
HYEDKDRDNQIYLSISLPFGNGGRVGYDMQNSSHSTTHRMSWNDTLDERNSWGMSAGLQS
CCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
DRPDNGAQVSGNYQHLSSAGEWDISGTYAANDYSSVSSSWSGSFTATQYGAAFHRRSSTN
CCCCCCCEECCCHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCEEEHHHHHHHHHCCCCC
EPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVI
CCEEEEECCCCEECCCCCCCCCCCCCCEEEEEHHCCCCCCEEEEECCCCCCCHHHHHHHH
KETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWL
HHHHHHCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH
SGVAENQKFTVVWGDSQHCSLHLPEHMEDTANRLILPCH
HHHCCCCEEEEEECCCCCEEEECCHHHHHHHCCEEEECC
>Mature Secondary Structure
MDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSV
CCCEEEHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCEEEEECCCCCCCCCEEEEE
AVNNNQISNEQKINWHKNDDKTIPCINDLLVDKFGLKPEVRQSLPLINQCVDFSSRPEML
EECCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCHHHHHHCHHHHHHHCCCCCCCEE
FNFDQANQQLNISIPQAWLAWHSENWTPPSTWKEGVAGVLMDYNLFASSYRPQDGSSSTN
EEECCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHEEEEEHHHHHCCCCCCCCCCCCC
LNAYGTAGINTGAWRLRSDYQLNHTDSDDNHEQSGEISRTYLFRPLPQLGSKLTLGETDF
EEEEEECCCCCCEEEEECCEEECCCCCCCCCCCCCCCEEEEEECCHHHHCCEEEECCCCC
SPNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTISQSGRVIYQKKVPPG
CCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCCCCEEECCCEEEEECCCCEEEEECCCCC
PFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSH
CEEEECCCCCCCEEEEEEEECCCCCCCEEEEECCCCCEEECCCCEEEEEECCCCCCCCCC
QTENETFFSNEVSWGMLSNTSLYSGLLLSGDDYHSAAMGIGQNMLWLGALSFDVTWASSH
CCCCCEEECCCCCCCEEECCCHHCEEEECCCCHHHHHHHCCCCEEEEEEEEEEEEECCCC
FDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYLDHKYNDSDAQDEKQ
CCCCHHCCCCEEEECCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCE
TISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGDWRDISISTSFNTT
EEEEECCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCC
HYEDKDRDNQIYLSISLPFGNGGRVGYDMQNSSHSTTHRMSWNDTLDERNSWGMSAGLQS
CCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
DRPDNGAQVSGNYQHLSSAGEWDISGTYAANDYSSVSSSWSGSFTATQYGAAFHRRSSTN
CCCCCCCEECCCHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCEEEHHHHHHHHHCCCCC
EPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVI
CCEEEEECCCCEECCCCCCCCCCCCCCEEEEEHHCCCCCCEEEEECCCCCCCHHHHHHHH
KETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWL
HHHHHHCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH
SGVAENQKFTVVWGDSQHCSLHLPEHMEDTANRLILPCH
HHHCCCCEEEEEECCCCCEEEECCHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]