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The map label for this gene is ybgP

Identifier: 30062120

GI number: 30062120

Start: 603448

End: 604179

Strand: Direct

Name: ybgP

Synonym: S0593

Alternate gene names: 30062120

Gene position: 603448-604179 (Clockwise)

Preceding gene: 30062119

Following gene: 30062121

Centisome position: 13.12

GC content: 49.45

Gene sequence:

>732_bases
ATGACATTTATGAAAGGACTACCCCTTTTGTTGTTGGTTGCCAGTCTGTGCAGCCACGCTGCACTACAACCCGATCGCAC
TCGTATTGTGTTTAACGCTAATGATAAAGCTACCAGTCTGCGGGTGGATAATCGTAGCGATAAACTCCCCTACCTCGCTT
ATTCCTGGCTCGAAAATGAAAAAGGGGAGAAAAGCGATGATCTTCTGGTCGCCCTGCCGCCGATACAACGTCTGGAACCG
AAAGCAACAACACAGGTACGGATAGTAAAGCAAGCCTCGACCACAAAATTACCGGGCGATCGCGAAACGCTATTTTTCTA
CAATATGCGTGAAATTCCTCCCGCCCCGGAAAAAAACAGCGACCATGCCGTTCTGCAAGTCGCCATTCAGAGTCGTATCA
AGGTGTTCTGGCGACCGGCTGCATTACGCAAGAAAGCAGGAGAAAAGGTCGAACTGCAGTTACAGGTCAGCCAGCAGGGC
AACCAACTGACACTGAAAAATCCTACCGCGTATTATCTGACCATTGCCTACCTGGGACGAAATGAAAAAGGCGTTCTCCC
CGGCTTCAAAACCGTGATGGTTGCGCCTTTTAGTACGGTCAACACAAACACCGGAAATTATAGCGGCAGCCAGTTTTATC
TCGGTTATATGGATGATTACGGCGCGTTACGCATGACGACGCTCAACTGCAGCGGACAATGCCATTTACAAGCCGTGGAG
GCGAAGAAATGA

Upstream 100 bases:

>100_bases
TCTGGGGTGATAGCCAGCATTGCTCGCTCCATCTTCCTGAACATATGGAAGACACCGCAAATCGCCTGATTTTACCTTGT
CATTAATTAAGGAAATGAAA

Downstream 100 bases:

>100_bases
GTGCTGGCAAGGGAGTGTTGCTCGTCATCTGTCTGTTATTTCTGTCGTTGAAGTCTGCGCTTGCCCTGAACTGCTACTTT
GGTTCATCCGGTGGCTCGGT

Product: putative chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTFMKGLPLLLLVASLCSHAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENEKGEKSDDLLVALPPIQRLEP
KATTQVRIVKQASTTKLPGDRETLFFYNMREIPPAPEKNSDHAVLQVAIQSRIKVFWRPAALRKKAGEKVELQLQVSQQG
NQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGNYSGSQFYLGYMDDYGALRMTTLNCSGQCHLQAVE
AKK

Sequences:

>Translated_243_residues
MTFMKGLPLLLLVASLCSHAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENEKGEKSDDLLVALPPIQRLEP
KATTQVRIVKQASTTKLPGDRETLFFYNMREIPPAPEKNSDHAVLQVAIQSRIKVFWRPAALRKKAGEKVELQLQVSQQG
NQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGNYSGSQFYLGYMDDYGALRMTTLNCSGQCHLQAVE
AKK
>Mature_242_residues
TFMKGLPLLLLVASLCSHAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENEKGEKSDDLLVALPPIQRLEPK
ATTQVRIVKQASTTKLPGDRETLFFYNMREIPPAPEKNSDHAVLQVAIQSRIKVFWRPAALRKKAGEKVELQLQVSQQGN
QLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGNYSGSQFYLGYMDDYGALRMTTLNCSGQCHLQAVEA
KK

Specific function: Could be required for the biogenesis of the putative ybgD fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786936, Length=242, Percent_Identity=90.9090909090909, Blast_Score=466, Evalue=1e-133,
Organism=Escherichia coli, GI87082203, Length=227, Percent_Identity=40.0881057268723, Blast_Score=182, Evalue=1e-47,
Organism=Escherichia coli, GI1788677, Length=225, Percent_Identity=37.7777777777778, Blast_Score=160, Evalue=6e-41,
Organism=Escherichia coli, GI1790771, Length=226, Percent_Identity=31.858407079646, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1788428, Length=226, Percent_Identity=30.9734513274336, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1786333, Length=210, Percent_Identity=30, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786743, Length=233, Percent_Identity=33.4763948497854, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789532, Length=219, Percent_Identity=30.5936073059361, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787171, Length=206, Percent_Identity=33.9805825242718, Blast_Score=98, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27199; Mature: 27067

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFMKGLPLLLLVASLCSHAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENE
CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEECCCC
KGEKSDDLLVALPPIQRLEPKATTQVRIVKQASTTKLPGDRETLFFYNMREIPPAPEKNS
CCCCCCCEEEEECCHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCC
DHAVLQVAIQSRIKVFWRPAALRKKAGEKVELQLQVSQQGNQLTLKNPTAYYLTIAYLGR
CHHEEHEEHHHCEEEEECCHHHHHCCCCEEEEEEEECCCCCEEEEECCCEEEEEEEEECC
NEKGVLPGFKTVMVAPFSTVNTNTGNYSGSQFYLGYMDDYGALRMTTLNCSGQCHLQAVE
CCCCCCCCCEEEEEECCEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEEEC
AKK
CCC
>Mature Secondary Structure 
TFMKGLPLLLLVASLCSHAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENE
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEECCCC
KGEKSDDLLVALPPIQRLEPKATTQVRIVKQASTTKLPGDRETLFFYNMREIPPAPEKNS
CCCCCCCEEEEECCHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCC
DHAVLQVAIQSRIKVFWRPAALRKKAGEKVELQLQVSQQGNQLTLKNPTAYYLTIAYLGR
CHHEEHEEHHHCEEEEECCHHHHHCCCCEEEEEEEECCCCCEEEEECCCEEEEEEEEECC
NEKGVLPGFKTVMVAPFSTVNTNTGNYSGSQFYLGYMDDYGALRMTTLNCSGQCHLQAVE
CCCCCCCCCEEEEEECCEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEEEC
AKK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]