| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349965
Identifier: 29349965
GI number: 29349965
Start: 5978777
End: 5980204
Strand: Reverse
Name: 29349965
Synonym: BT_4557
Alternate gene names: NA
Gene position: 5980204-5978777 (Counterclockwise)
Preceding gene: 29349968
Following gene: 29349964
Centisome position: 95.52
GC content: 42.37
Gene sequence:
>1428_bases ATGAAAAGAAAATATATTCTATTTATAATTTGCAGTTTCTTCCTCGGAGGAGTATCTGCACAAACATTGGAACAGGCACG CACCTTATTTACAAAAGGTGACTACGAACAAGCCAAACCCGTATTTCAGAAATATGCCAAATCTCAACCATCCAATGGTA ACTACAGCTATTGGTACGGTGTCTGCTGCCTGAAAACCGGAGAACCGGAAGAAGCCGTGAAGTATCTCGAAACCGCTGTA AAAAGACGGGTAGCCGGTGGACAACTCTATCTGGGACAAGCTTACAATGATACTTATCGTTTCGAAGATGCAGTCAACTG CTTTGAAGAATATATCGCCGACCTCAGCAAACGCAAAAGATCGACGGAAGAAGCTGAAGCTCTATTGGAAAAGAGCAAAG CTGACCTGCGTATGCTCAAAGGAGTAGAAGACGTGTGCATTATTGACAGTTTCGTGGTAGATAAAGCAAATTTCCTGAGC GCATACAAGATCAGTGAAGAGTCTGGCAAGCTATTTACATTCAACGAATTCTTCCAGACCGAAGGAGATCATCCGGGAAC AGTTTATGAAACAGAAATCGGTAATAAAATCTATTATAGCGAAAAGGGAGAAAGAGGCAATCTGGATATATTCTCCAAAA ATAAATTACTGAATGAATGGAGCAACGGTCGCCCGTTGCCCGGCAGCATCAACGAATCCGGAAACGCCAACTACCCGTTT GTTTTATCGGATGGTGTTACTATTTATTATGCAACCGATGGCGAAGGACTGGGAGGATATGATATTTTTGTCACTCGTTA CAACACAAATACGGACTCTTATCTGACGCCGGAAAATGTGGGAATGCCGTTCAATTCACCTTATAATGATTATATGTACG TCATCGACGAATACAATAATCTGGGTTGGTTTGCCTCCGACCGTTTCCAGCCCGAAGAGAAAGTCTGCATCTATGTATTC ATTCCTAATTCGTCTAAACAGACTTATAATTATGAGGCGATGGACCCGCAGCAGATGATCCGTCTGGCACAGATTCATTC GCTGAAGGAAACTTGGAAAGATGAAAATACAGTAACGGAGGCACTGCAACGTCTGAAAGAGGCAATCAATCATAAGCCAC AGGAACGTCGTGTGGTTGATTTCGAGTTTGTCATCGATGATAGCACGACCTATTATCAGTTGAGTGACTTCAAATCACCC AAAGCAAAGCTACTGTTCCAAAGTTACCGGCAACTGGAAAAAGATTATCTGCAACAGGAAGATAAACTGAACGGTCTGCG CCAGCAATATGCAAGCGCCAATCAACAAGGAAAAGAAAAACTTGCTCCCGCAATCCTTGATCTGGAAAAAAGAATTCTGC AAATGAATGAAGAGCTGGATGCTCTTGGAGTAAGTGTGCGTAATGCCGAAAAAACAAAATCAAAATAA
Upstream 100 bases:
>100_bases ATTTAAAGAAGAATTAACATAATAGAATCTCTGAAAAAGGGTTTATTTCTAATAAATTTGTACTTTTGAACAATTGATGC ATGGATTAGTGAATAAAACA
Downstream 100 bases:
>100_bases TACAGAGTTATGGACATACTGATTATCACCGTTCTCATCATTGCTGCAGTAATACTATTTTTGGTTGAACTGTTTGTCAT TCCGGGGATTAGCCTGGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 475; Mature: 475
Protein sequence:
>475_residues MKRKYILFIICSFFLGGVSAQTLEQARTLFTKGDYEQAKPVFQKYAKSQPSNGNYSYWYGVCCLKTGEPEEAVKYLETAV KRRVAGGQLYLGQAYNDTYRFEDAVNCFEEYIADLSKRKRSTEEAEALLEKSKADLRMLKGVEDVCIIDSFVVDKANFLS AYKISEESGKLFTFNEFFQTEGDHPGTVYETEIGNKIYYSEKGERGNLDIFSKNKLLNEWSNGRPLPGSINESGNANYPF VLSDGVTIYYATDGEGLGGYDIFVTRYNTNTDSYLTPENVGMPFNSPYNDYMYVIDEYNNLGWFASDRFQPEEKVCIYVF IPNSSKQTYNYEAMDPQQMIRLAQIHSLKETWKDENTVTEALQRLKEAINHKPQERRVVDFEFVIDDSTTYYQLSDFKSP KAKLLFQSYRQLEKDYLQQEDKLNGLRQQYASANQQGKEKLAPAILDLEKRILQMNEELDALGVSVRNAEKTKSK
Sequences:
>Translated_475_residues MKRKYILFIICSFFLGGVSAQTLEQARTLFTKGDYEQAKPVFQKYAKSQPSNGNYSYWYGVCCLKTGEPEEAVKYLETAV KRRVAGGQLYLGQAYNDTYRFEDAVNCFEEYIADLSKRKRSTEEAEALLEKSKADLRMLKGVEDVCIIDSFVVDKANFLS AYKISEESGKLFTFNEFFQTEGDHPGTVYETEIGNKIYYSEKGERGNLDIFSKNKLLNEWSNGRPLPGSINESGNANYPF VLSDGVTIYYATDGEGLGGYDIFVTRYNTNTDSYLTPENVGMPFNSPYNDYMYVIDEYNNLGWFASDRFQPEEKVCIYVF IPNSSKQTYNYEAMDPQQMIRLAQIHSLKETWKDENTVTEALQRLKEAINHKPQERRVVDFEFVIDDSTTYYQLSDFKSP KAKLLFQSYRQLEKDYLQQEDKLNGLRQQYASANQQGKEKLAPAILDLEKRILQMNEELDALGVSVRNAEKTKSK >Mature_475_residues MKRKYILFIICSFFLGGVSAQTLEQARTLFTKGDYEQAKPVFQKYAKSQPSNGNYSYWYGVCCLKTGEPEEAVKYLETAV KRRVAGGQLYLGQAYNDTYRFEDAVNCFEEYIADLSKRKRSTEEAEALLEKSKADLRMLKGVEDVCIIDSFVVDKANFLS AYKISEESGKLFTFNEFFQTEGDHPGTVYETEIGNKIYYSEKGERGNLDIFSKNKLLNEWSNGRPLPGSINESGNANYPF VLSDGVTIYYATDGEGLGGYDIFVTRYNTNTDSYLTPENVGMPFNSPYNDYMYVIDEYNNLGWFASDRFQPEEKVCIYVF IPNSSKQTYNYEAMDPQQMIRLAQIHSLKETWKDENTVTEALQRLKEAINHKPQERRVVDFEFVIDDSTTYYQLSDFKSP KAKLLFQSYRQLEKDYLQQEDKLNGLRQQYASANQQGKEKLAPAILDLEKRILQMNEELDALGVSVRNAEKTKSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54685; Mature: 54685
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRKYILFIICSFFLGGVSAQTLEQARTLFTKGDYEQAKPVFQKYAKSQPSNGNYSYWYG CCCCEEHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE VCCLKTGEPEEAVKYLETAVKRRVAGGQLYLGQAYNDTYRFEDAVNCFEEYIADLSKRKR EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC STEEAEALLEKSKADLRMLKGVEDVCIIDSFVVDKANFLSAYKISEESGKLFTFNEFFQT CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHEEECCCCCCEEEEHHHHHC EGDHPGTVYETEIGNKIYYSEKGERGNLDIFSKNKLLNEWSNGRPLPGSINESGNANYPF CCCCCCCEEEECCCCEEEECCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCE VLSDGVTIYYATDGEGLGGYDIFVTRYNTNTDSYLTPENVGMPFNSPYNDYMYVIDEYNN EEECCEEEEEEECCCCCCCEEEEEEEECCCCCCEECCHHCCCCCCCCCCCEEEEEECCCC LGWFASDRFQPEEKVCIYVFIPNSSKQTYNYEAMDPQQMIRLAQIHSLKETWKDENTVTE CCCEECCCCCCCCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHH ALQRLKEAINHKPQERRVVDFEFVIDDSTTYYQLSDFKSPKAKLLFQSYRQLEKDYLQQE HHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH DKLNGLRQQYASANQQGKEKLAPAILDLEKRILQMNEELDALGVSVRNAEKTKSK HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC >Mature Secondary Structure MKRKYILFIICSFFLGGVSAQTLEQARTLFTKGDYEQAKPVFQKYAKSQPSNGNYSYWYG CCCCEEHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE VCCLKTGEPEEAVKYLETAVKRRVAGGQLYLGQAYNDTYRFEDAVNCFEEYIADLSKRKR EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC STEEAEALLEKSKADLRMLKGVEDVCIIDSFVVDKANFLSAYKISEESGKLFTFNEFFQT CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHEEECCCCCCEEEEHHHHHC EGDHPGTVYETEIGNKIYYSEKGERGNLDIFSKNKLLNEWSNGRPLPGSINESGNANYPF CCCCCCCEEEECCCCEEEECCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCE VLSDGVTIYYATDGEGLGGYDIFVTRYNTNTDSYLTPENVGMPFNSPYNDYMYVIDEYNN EEECCEEEEEEECCCCCCCEEEEEEEECCCCCCEECCHHCCCCCCCCCCCEEEEEECCCC LGWFASDRFQPEEKVCIYVFIPNSSKQTYNYEAMDPQQMIRLAQIHSLKETWKDENTVTE CCCEECCCCCCCCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHH ALQRLKEAINHKPQERRVVDFEFVIDDSTTYYQLSDFKSPKAKLLFQSYRQLEKDYLQQE HHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH DKLNGLRQQYASANQQGKEKLAPAILDLEKRILQMNEELDALGVSVRNAEKTKSK HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA