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The map label for this gene is xerC [C]

Identifier: 29349929

GI number: 29349929

Start: 5941017

End: 5941820

Strand: Reverse

Name: xerC [C]

Synonym: BT_4521

Alternate gene names: 29349929

Gene position: 5941820-5941017 (Counterclockwise)

Preceding gene: 29349931

Following gene: 29349922

Centisome position: 94.91

GC content: 37.81

Gene sequence:

>804_bases
ATGGTAACAAAATTCAAAAGCTATCTCGCCAAAACTAATTTGGCAAAAAACACTGTTACATCGTATGTGTGGACAGTACA
GTATTTCCTCAATCATTATGGAGAAGTAAACAAAAAGAACCTTTTAACATATAAAGGGTATCTGGTGGAGAACTTTAAAC
CGCAAACGGTAAACCTACGATTGCAAGGTATCAACAAGTATTTGGAATTTACAAAACAGGAGAAACTGAAGGTAAAGTTC
GTCAAAGTACAGCAGAAGAACTTTTTGGAAAACGTAATCAGCGATGCAGACTACAAATTTCTAAAAACACGCTTAAAAGC
TGATGGTTATAATGAGTGGTATTTTATCGTATGGTTTATGGCTGCCACAGGCGCACGTGTCAGTGAATTGCTTCACATCA
AAGCTGAGCATGTACAAGTTGGCCATCTTGATCTTTACAGTAAAGGTGGAAAAATACGTCGTTTATATATTCCGAAAAAT
TTGCGTACAGAAGCCACAAAATGGCTCAAAGAAAAAAGTCTTATTTCCGGCTATATATTCCTGAACCGATTTGGGGAACG
TATTACAACACGTGGCATAGCCCAACAACTGAAACATTTTGCGGGAAAATACGGAATGAATAAGGAAGTGGTTTATCCTC
ATTCATTCCGTCATCGTTTTGCCAAGAACTTCCTTGACCGATTCAATGACCTTGCTCTACTTGCTGACCTTATGGGACAT
GAAAGTATTGAAACTACTCGTATTTATCTCCGTCGAACAGCTAGTGAACAGCAAAAAATTGTGGACAAAGTAGTAAACTG
GTAA

Upstream 100 bases:

>100_bases
GTACTTGCATAGGTGCAACAGTCCATCCATTAGGCAACTGCGTATAATGCCCGATATATTCTATTATATTGTTGCCGTAT
TCATTATAAATCAATATAAT

Downstream 100 bases:

>100_bases
GTTTTATCTATCCTTAGAAGTGTAATTAATTACACTTCTAAGGATTTTTGAATATTATCAAGGGATGAAAAAAGTTCTTC
TATCTTTTGAACGATGCGTT

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MVTKFKSYLAKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLTYKGYLVENFKPQTVNLRLQGINKYLEFTKQEKLKVKF
VKVQQKNFLENVISDADYKFLKTRLKADGYNEWYFIVWFMAATGARVSELLHIKAEHVQVGHLDLYSKGGKIRRLYIPKN
LRTEATKWLKEKSLISGYIFLNRFGERITTRGIAQQLKHFAGKYGMNKEVVYPHSFRHRFAKNFLDRFNDLALLADLMGH
ESIETTRIYLRRTASEQQKIVDKVVNW

Sequences:

>Translated_267_residues
MVTKFKSYLAKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLTYKGYLVENFKPQTVNLRLQGINKYLEFTKQEKLKVKF
VKVQQKNFLENVISDADYKFLKTRLKADGYNEWYFIVWFMAATGARVSELLHIKAEHVQVGHLDLYSKGGKIRRLYIPKN
LRTEATKWLKEKSLISGYIFLNRFGERITTRGIAQQLKHFAGKYGMNKEVVYPHSFRHRFAKNFLDRFNDLALLADLMGH
ESIETTRIYLRRTASEQQKIVDKVVNW
>Mature_267_residues
MVTKFKSYLAKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLTYKGYLVENFKPQTVNLRLQGINKYLEFTKQEKLKVKF
VKVQQKNFLENVISDADYKFLKTRLKADGYNEWYFIVWFMAATGARVSELLHIKAEHVQVGHLDLYSKGGKIRRLYIPKN
LRTEATKWLKEKSLISGYIFLNRFGERITTRGIAQQLKHFAGKYGMNKEVVYPHSFRHRFAKNFLDRFNDLALLADLMGH
ESIETTRIYLRRTASEQQKIVDKVVNW

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=269, Percent_Identity=24.5353159851301, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 31541; Mature: 31541

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTKFKSYLAKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLTYKGYLVENFKPQTVNLR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECEEEECCCCCEEEEE
LQGINKYLEFTKQEKLKVKFVKVQQKNFLENVISDADYKFLKTRLKADGYNEWYFIVWFM
EEHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEH
AATGARVSELLHIKAEHVQVGHLDLYSKGGKIRRLYIPKNLRTEATKWLKEKSLISGYIF
HHCCHHHHHHHHHHHHHEEECCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
LNRFGERITTRGIAQQLKHFAGKYGMNKEVVYPHSFRHRFAKNFLDRFNDLALLADLMGH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
ESIETTRIYLRRTASEQQKIVDKVVNW
CCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVTKFKSYLAKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLTYKGYLVENFKPQTVNLR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECEEEECCCCCEEEEE
LQGINKYLEFTKQEKLKVKFVKVQQKNFLENVISDADYKFLKTRLKADGYNEWYFIVWFM
EEHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEH
AATGARVSELLHIKAEHVQVGHLDLYSKGGKIRRLYIPKNLRTEATKWLKEKSLISGYIF
HHCCHHHHHHHHHHHHHEEECCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
LNRFGERITTRGIAQQLKHFAGKYGMNKEVVYPHSFRHRFAKNFLDRFNDLALLADLMGH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
ESIETTRIYLRRTASEQQKIVDKVVNW
CCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA