| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349854
Identifier: 29349854
GI number: 29349854
Start: 5857503
End: 5858390
Strand: Reverse
Name: 29349854
Synonym: BT_4446
Alternate gene names: NA
Gene position: 5858390-5857503 (Counterclockwise)
Preceding gene: 29349855
Following gene: 29349849
Centisome position: 93.58
GC content: 41.67
Gene sequence:
>888_bases ATGCATCATATTATGAAAACGAACTATTTATTAGTGCTGTTCGCATTGCTGCTGGCAATTCCGCAGGCAGCAGATGCGAA AAAGAAGAAAGACATTGCCATACAACTCTATTCGGTCAGAGACATCATAAATAATGGAACCGACCTCAACGTAGTGTTGA AGAATCTGGCGCAAATGGGATACACCAGCATCGAAGCCGCCAATTATGATAATGGCAAGTTCTATGGCAAAACTCCGGAA GAGTTTAAGAATGCTGTCGAAAAGGCTGGTATGAAAGTACTGTCTTCACATTGTTCCAGAGGATTGTCGGACAAGGAAGT GGCTTCCGGAGATTTCTCCGAGTCACTGAAATGGTGGGATCAAAGCATTGCCGCTCATAAAGCAGCAGGCATGAAATACA TCGTAAATCCGGGAATCGGTGTTCCTAAAACAATGAAAGAGATGAAGATGTATTGCGACTATTTCAATGAAATAGGCAAA AGATGCCAGCAGAACGGTATGAAATTCGGATATCATAATCATGCGCATGAATTTCAGAAAGTAGAAAATCAAGCGGTTAT GTTGGACTATATGATTGAGAATACCAATCCTGAGTATGTCTTTTTTCAGATGGATGTATATTGGATTGTCAGAGGGCAGC ACAGTCCTGTGGACTATTTCAACAAGTATCCGGGACGTTTCACCGTGCTTCATATCAAAGATGACAAAGAAATCGGAGAT AGTGGTATGGTCGGATTCGATGCTATCTTCAGAAATGCAAAGGTTGCCGGCGTAAAGCATATTGTTGCTGAAATAGAAGG GTACAGTTGTCCTGTAGAGGAAAGTGTCAAGAAGAGTCTGGACTATTTGCTGGATGCTCCTTTTGTAAAGGCGTCTTATA GTAAATAG
Upstream 100 bases:
>100_bases TGAATAATTGCGGTGGTGAAAACCACGAAGGATTTATCGGAATGCAGGATCACGGTGATGACGTATGGTTCCGCAATATC CGCGTGAAGGTTCTTGACTA
Downstream 100 bases:
>100_bases AAGTAAATACAGAAAAAGGAAACAGTAGGTTCACGCTTTATTGCTTGAGTCTACTGTTTTTTCTTATTTTATTTTAATAT ACCTCCCAACATTTCCACCC
Product: sugar phosphate isomerase/epimerase
Products: NA
Alternate protein names: Sugar Phosphate Isomerase/Epimerase; Xylose Isomerase Domain-Containing Protein; Xylose Isomerase DomaiN-Containing Protein Tim Barrel; Twin-Arginine Translocation Pathway Signal; Xylose Isomerase Domain-Containing Protein TIM Barrel; Sugar Phosphate Isomerase / Epimerase; Sugar Phosphate Isomerases/Epimerases; Xylose Isomerase-Like TIM Barrel; Xylose Isomerase Family Protein; Xylose Isomerase-Like Protein; Xlose Isomerase Domain-Containing Protein; Xylose Isomerase Domain-Containing Protein Tim Barrel
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MHHIMKTNYLLVLFALLLAIPQAADAKKKKDIAIQLYSVRDIINNGTDLNVVLKNLAQMGYTSIEAANYDNGKFYGKTPE EFKNAVEKAGMKVLSSHCSRGLSDKEVASGDFSESLKWWDQSIAAHKAAGMKYIVNPGIGVPKTMKEMKMYCDYFNEIGK RCQQNGMKFGYHNHAHEFQKVENQAVMLDYMIENTNPEYVFFQMDVYWIVRGQHSPVDYFNKYPGRFTVLHIKDDKEIGD SGMVGFDAIFRNAKVAGVKHIVAEIEGYSCPVEESVKKSLDYLLDAPFVKASYSK
Sequences:
>Translated_295_residues MHHIMKTNYLLVLFALLLAIPQAADAKKKKDIAIQLYSVRDIINNGTDLNVVLKNLAQMGYTSIEAANYDNGKFYGKTPE EFKNAVEKAGMKVLSSHCSRGLSDKEVASGDFSESLKWWDQSIAAHKAAGMKYIVNPGIGVPKTMKEMKMYCDYFNEIGK RCQQNGMKFGYHNHAHEFQKVENQAVMLDYMIENTNPEYVFFQMDVYWIVRGQHSPVDYFNKYPGRFTVLHIKDDKEIGD SGMVGFDAIFRNAKVAGVKHIVAEIEGYSCPVEESVKKSLDYLLDAPFVKASYSK >Mature_295_residues MHHIMKTNYLLVLFALLLAIPQAADAKKKKDIAIQLYSVRDIINNGTDLNVVLKNLAQMGYTSIEAANYDNGKFYGKTPE EFKNAVEKAGMKVLSSHCSRGLSDKEVASGDFSESLKWWDQSIAAHKAAGMKYIVNPGIGVPKTMKEMKMYCDYFNEIGK RCQQNGMKFGYHNHAHEFQKVENQAVMLDYMIENTNPEYVFFQMDVYWIVRGQHSPVDYFNKYPGRFTVLHIKDDKEIGD SGMVGFDAIFRNAKVAGVKHIVAEIEGYSCPVEESVKKSLDYLLDAPFVKASYSK
Specific function: Unknown
COG id: COG1082
COG function: function code G; Sugar phosphate isomerases/epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33434; Mature: 33434
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHHIMKTNYLLVLFALLLAIPQAADAKKKKDIAIQLYSVRDIINNGTDLNVVLKNLAQMG CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHCC YTSIEAANYDNGKFYGKTPEEFKNAVEKAGMKVLSSHCSRGLSDKEVASGDFSESLKWWD CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHH QSIAAHKAAGMKYIVNPGIGVPKTMKEMKMYCDYFNEIGKRCQQNGMKFGYHNHAHEFQK HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH VENQAVMLDYMIENTNPEYVFFQMDVYWIVRGQHSPVDYFNKYPGRFTVLHIKDDKEIGD HHCCEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHCCCCEEEEEEEECCCCCCC SGMVGFDAIFRNAKVAGVKHIVAEIEGYSCPVEESVKKSLDYLLDAPFVKASYSK CCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MHHIMKTNYLLVLFALLLAIPQAADAKKKKDIAIQLYSVRDIINNGTDLNVVLKNLAQMG CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHCC YTSIEAANYDNGKFYGKTPEEFKNAVEKAGMKVLSSHCSRGLSDKEVASGDFSESLKWWD CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHH QSIAAHKAAGMKYIVNPGIGVPKTMKEMKMYCDYFNEIGKRCQQNGMKFGYHNHAHEFQK HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH VENQAVMLDYMIENTNPEYVFFQMDVYWIVRGQHSPVDYFNKYPGRFTVLHIKDDKEIGD HHCCEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHCCCCEEEEEEEECCCCCCC SGMVGFDAIFRNAKVAGVKHIVAEIEGYSCPVEESVKKSLDYLLDAPFVKASYSK CCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA