| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349849
Identifier: 29349849
GI number: 29349849
Start: 5853197
End: 5853922
Strand: Reverse
Name: 29349849
Synonym: BT_4441
Alternate gene names: NA
Gene position: 5853922-5853197 (Counterclockwise)
Preceding gene: 29349854
Following gene: 29349845
Centisome position: 93.51
GC content: 32.51
Gene sequence:
>726_bases TTGTCAGATATTCTTTGTAGAACTTTACCTTCTGAAGCTATCAGATGGAAGCTAGGAGTATTATCTCCAATCATAATTTT CACTTTTTTCATTCTTATTTTTTATTTATATTATTATACTAAGTTCAAAGAGAACTTGGAAATTACAAACTTTGATGAAT TTCAATATTTTGTCAATTATACCAATAGTAATGGCCGTTATTTGGATTCTGCTAATAACAATCGTATTGATTCGAGTCCA TTCCAGAATTGTATAAATTTGAAATCTATTGTTCTTCCACCCAACATTTTTAATATCGCTCTCAGTTTTTTGGCTAATAC TAAAATTTCTAAAATTTTAATTCCCAAGTCAGTTGGTCTTTGTGATGTTGCAACGTTTAAGAATTGTGTAAACCTCACTT CTATTGTGTTTGAGGATGGAGGGGATGTACCATTATACGTCGGCGGTGATCTGTGGCTAGAAAACACTCAAGTTACAATA TTAGTACTTCCATTTAAAACATACAGAATTAGAGGATATTGGAGAAGAGGCTCTAATCTAAATACATTATATGTAAAATC AACAATTCCACCAATATTGGAACACGGATGGGGAGATAATCCTGATACCTGTGATCTATACGTTCCTATTGGATGCAAGG AAGTTTATGCTTCTGCGACCAATTGGGGAAGTTTTAGAACTATTACAGAGTATGACTTTGATCTTAACCCCAATAATGTA CACTAA
Upstream 100 bases:
>100_bases CTCACAATAATGCTCCGGCAACTCTAACAATGGTTCGGGTAGCTTTTGAGAACCAATATAGTAGGTATACCCTAAGTATA TTTCATACCCAAAAATCTGT
Downstream 100 bases:
>100_bases CAATCAGAGTAGAAAATTAGTATCCCATAATCCTAGAAGCCAATGAAGTCCATCCGGAAGCAGACTTGTAAGCATTAACT GCTGCTTCTGGGACATAAAT
Product: cell surface protein
Products: NA
Alternate protein names: Cell Surface Protein
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MSDILCRTLPSEAIRWKLGVLSPIIIFTFFILIFYLYYYTKFKENLEITNFDEFQYFVNYTNSNGRYLDSANNNRIDSSP FQNCINLKSIVLPPNIFNIALSFLANTKISKILIPKSVGLCDVATFKNCVNLTSIVFEDGGDVPLYVGGDLWLENTQVTI LVLPFKTYRIRGYWRRGSNLNTLYVKSTIPPILEHGWGDNPDTCDLYVPIGCKEVYASATNWGSFRTITEYDFDLNPNNV H
Sequences:
>Translated_241_residues MSDILCRTLPSEAIRWKLGVLSPIIIFTFFILIFYLYYYTKFKENLEITNFDEFQYFVNYTNSNGRYLDSANNNRIDSSP FQNCINLKSIVLPPNIFNIALSFLANTKISKILIPKSVGLCDVATFKNCVNLTSIVFEDGGDVPLYVGGDLWLENTQVTI LVLPFKTYRIRGYWRRGSNLNTLYVKSTIPPILEHGWGDNPDTCDLYVPIGCKEVYASATNWGSFRTITEYDFDLNPNNV H >Mature_240_residues SDILCRTLPSEAIRWKLGVLSPIIIFTFFILIFYLYYYTKFKENLEITNFDEFQYFVNYTNSNGRYLDSANNNRIDSSPF QNCINLKSIVLPPNIFNIALSFLANTKISKILIPKSVGLCDVATFKNCVNLTSIVFEDGGDVPLYVGGDLWLENTQVTIL VLPFKTYRIRGYWRRGSNLNTLYVKSTIPPILEHGWGDNPDTCDLYVPIGCKEVYASATNWGSFRTITEYDFDLNPNNVH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27628; Mature: 27497
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDILCRTLPSEAIRWKLGVLSPIIIFTFFILIFYLYYYTKFKENLEITNFDEFQYFVNY CCCCHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE TNSNGRYLDSANNNRIDSSPFQNCINLKSIVLPPNIFNIALSFLANTKISKILIPKSVGL ECCCCEEEECCCCCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCCCE CDVATFKNCVNLTSIVFEDGGDVPLYVGGDLWLENTQVTILVLPFKTYRIRGYWRRGSNL EHHHHHHHHHHHEEEEEECCCCEEEEECCEEEEECCEEEEEEEECEEEEEEEEEECCCCC NTLYVKSTIPPILEHGWGDNPDTCDLYVPIGCKEVYASATNWGSFRTITEYDFDLNPNNV EEEEEECCCCHHHHCCCCCCCCCEEEEEECCHHHHHHCCCCCCCEEEEEEEECCCCCCCC H C >Mature Secondary Structure SDILCRTLPSEAIRWKLGVLSPIIIFTFFILIFYLYYYTKFKENLEITNFDEFQYFVNY CCCHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE TNSNGRYLDSANNNRIDSSPFQNCINLKSIVLPPNIFNIALSFLANTKISKILIPKSVGL ECCCCEEEECCCCCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCCCE CDVATFKNCVNLTSIVFEDGGDVPLYVGGDLWLENTQVTILVLPFKTYRIRGYWRRGSNL EHHHHHHHHHHHEEEEEECCCCEEEEECCEEEEECCEEEEEEEECEEEEEEEEEECCCCC NTLYVKSTIPPILEHGWGDNPDTCDLYVPIGCKEVYASATNWGSFRTITEYDFDLNPNNV EEEEEECCCCHHHHCCCCCCCCCEEEEEECCHHHHHHCCCCCCCEEEEEEEECCCCCCCC H C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA