Definition Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome.
Accession NC_004663
Length 6,260,361

Click here to switch to the map view.

The map label for this gene is 29349854

Identifier: 29349854

GI number: 29349854

Start: 5857503

End: 5858390

Strand: Reverse

Name: 29349854

Synonym: BT_4446

Alternate gene names: NA

Gene position: 5858390-5857503 (Counterclockwise)

Preceding gene: 29349855

Following gene: 29349849

Centisome position: 93.58

GC content: 41.67

Gene sequence:

>888_bases
ATGCATCATATTATGAAAACGAACTATTTATTAGTGCTGTTCGCATTGCTGCTGGCAATTCCGCAGGCAGCAGATGCGAA
AAAGAAGAAAGACATTGCCATACAACTCTATTCGGTCAGAGACATCATAAATAATGGAACCGACCTCAACGTAGTGTTGA
AGAATCTGGCGCAAATGGGATACACCAGCATCGAAGCCGCCAATTATGATAATGGCAAGTTCTATGGCAAAACTCCGGAA
GAGTTTAAGAATGCTGTCGAAAAGGCTGGTATGAAAGTACTGTCTTCACATTGTTCCAGAGGATTGTCGGACAAGGAAGT
GGCTTCCGGAGATTTCTCCGAGTCACTGAAATGGTGGGATCAAAGCATTGCCGCTCATAAAGCAGCAGGCATGAAATACA
TCGTAAATCCGGGAATCGGTGTTCCTAAAACAATGAAAGAGATGAAGATGTATTGCGACTATTTCAATGAAATAGGCAAA
AGATGCCAGCAGAACGGTATGAAATTCGGATATCATAATCATGCGCATGAATTTCAGAAAGTAGAAAATCAAGCGGTTAT
GTTGGACTATATGATTGAGAATACCAATCCTGAGTATGTCTTTTTTCAGATGGATGTATATTGGATTGTCAGAGGGCAGC
ACAGTCCTGTGGACTATTTCAACAAGTATCCGGGACGTTTCACCGTGCTTCATATCAAAGATGACAAAGAAATCGGAGAT
AGTGGTATGGTCGGATTCGATGCTATCTTCAGAAATGCAAAGGTTGCCGGCGTAAAGCATATTGTTGCTGAAATAGAAGG
GTACAGTTGTCCTGTAGAGGAAAGTGTCAAGAAGAGTCTGGACTATTTGCTGGATGCTCCTTTTGTAAAGGCGTCTTATA
GTAAATAG

Upstream 100 bases:

>100_bases
TGAATAATTGCGGTGGTGAAAACCACGAAGGATTTATCGGAATGCAGGATCACGGTGATGACGTATGGTTCCGCAATATC
CGCGTGAAGGTTCTTGACTA

Downstream 100 bases:

>100_bases
AAGTAAATACAGAAAAAGGAAACAGTAGGTTCACGCTTTATTGCTTGAGTCTACTGTTTTTTCTTATTTTATTTTAATAT
ACCTCCCAACATTTCCACCC

Product: sugar phosphate isomerase/epimerase

Products: NA

Alternate protein names: Sugar Phosphate Isomerase/Epimerase; Xylose Isomerase Domain-Containing Protein; Xylose Isomerase DomaiN-Containing Protein Tim Barrel; Twin-Arginine Translocation Pathway Signal; Xylose Isomerase Domain-Containing Protein TIM Barrel; Sugar Phosphate Isomerase / Epimerase; Sugar Phosphate Isomerases/Epimerases; Xylose Isomerase-Like TIM Barrel; Xylose Isomerase Family Protein; Xylose Isomerase-Like Protein; Xlose Isomerase Domain-Containing Protein; Xylose Isomerase Domain-Containing Protein Tim Barrel

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MHHIMKTNYLLVLFALLLAIPQAADAKKKKDIAIQLYSVRDIINNGTDLNVVLKNLAQMGYTSIEAANYDNGKFYGKTPE
EFKNAVEKAGMKVLSSHCSRGLSDKEVASGDFSESLKWWDQSIAAHKAAGMKYIVNPGIGVPKTMKEMKMYCDYFNEIGK
RCQQNGMKFGYHNHAHEFQKVENQAVMLDYMIENTNPEYVFFQMDVYWIVRGQHSPVDYFNKYPGRFTVLHIKDDKEIGD
SGMVGFDAIFRNAKVAGVKHIVAEIEGYSCPVEESVKKSLDYLLDAPFVKASYSK

Sequences:

>Translated_295_residues
MHHIMKTNYLLVLFALLLAIPQAADAKKKKDIAIQLYSVRDIINNGTDLNVVLKNLAQMGYTSIEAANYDNGKFYGKTPE
EFKNAVEKAGMKVLSSHCSRGLSDKEVASGDFSESLKWWDQSIAAHKAAGMKYIVNPGIGVPKTMKEMKMYCDYFNEIGK
RCQQNGMKFGYHNHAHEFQKVENQAVMLDYMIENTNPEYVFFQMDVYWIVRGQHSPVDYFNKYPGRFTVLHIKDDKEIGD
SGMVGFDAIFRNAKVAGVKHIVAEIEGYSCPVEESVKKSLDYLLDAPFVKASYSK
>Mature_295_residues
MHHIMKTNYLLVLFALLLAIPQAADAKKKKDIAIQLYSVRDIINNGTDLNVVLKNLAQMGYTSIEAANYDNGKFYGKTPE
EFKNAVEKAGMKVLSSHCSRGLSDKEVASGDFSESLKWWDQSIAAHKAAGMKYIVNPGIGVPKTMKEMKMYCDYFNEIGK
RCQQNGMKFGYHNHAHEFQKVENQAVMLDYMIENTNPEYVFFQMDVYWIVRGQHSPVDYFNKYPGRFTVLHIKDDKEIGD
SGMVGFDAIFRNAKVAGVKHIVAEIEGYSCPVEESVKKSLDYLLDAPFVKASYSK

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33434; Mature: 33434

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHHIMKTNYLLVLFALLLAIPQAADAKKKKDIAIQLYSVRDIINNGTDLNVVLKNLAQMG
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHCC
YTSIEAANYDNGKFYGKTPEEFKNAVEKAGMKVLSSHCSRGLSDKEVASGDFSESLKWWD
CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHH
QSIAAHKAAGMKYIVNPGIGVPKTMKEMKMYCDYFNEIGKRCQQNGMKFGYHNHAHEFQK
HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VENQAVMLDYMIENTNPEYVFFQMDVYWIVRGQHSPVDYFNKYPGRFTVLHIKDDKEIGD
HHCCEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHCCCCEEEEEEEECCCCCCC
SGMVGFDAIFRNAKVAGVKHIVAEIEGYSCPVEESVKKSLDYLLDAPFVKASYSK
CCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MHHIMKTNYLLVLFALLLAIPQAADAKKKKDIAIQLYSVRDIINNGTDLNVVLKNLAQMG
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHCC
YTSIEAANYDNGKFYGKTPEEFKNAVEKAGMKVLSSHCSRGLSDKEVASGDFSESLKWWD
CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHH
QSIAAHKAAGMKYIVNPGIGVPKTMKEMKMYCDYFNEIGKRCQQNGMKFGYHNHAHEFQK
HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VENQAVMLDYMIENTNPEYVFFQMDVYWIVRGQHSPVDYFNKYPGRFTVLHIKDDKEIGD
HHCCEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHCCCCEEEEEEEECCCCCCC
SGMVGFDAIFRNAKVAGVKHIVAEIEGYSCPVEESVKKSLDYLLDAPFVKASYSK
CCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA