Definition Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome.
Accession NC_004663
Length 6,260,361

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The map label for this gene is 29349840

Identifier: 29349840

GI number: 29349840

Start: 5839859

End: 5840272

Strand: Reverse

Name: 29349840

Synonym: BT_4432

Alternate gene names: NA

Gene position: 5840272-5839859 (Counterclockwise)

Preceding gene: 29349845

Following gene: 29349839

Centisome position: 93.29

GC content: 41.3

Gene sequence:

>414_bases
ATGAGCATACTTTACAAAACAACCCGCTTCGCGGATACATTCACAGGAGATAAGGAGACAAATGTCCGGGTACAACTGCT
ATCATGGGATACACTGGACACCAAAGCATTCGTAGAATATCTGGCAACCAAATACAACCTATCCAAAGGAGAAGCATACA
AAAGCCTCAGCATAGTACTGGAAGGAATGGAAGCCGTACTGAAAGACGGAAACATACTCAATCTGGACGACTTCGGCAGT
TTCTCTCTAAACGGAAATTTCTGTGAAGACAAAGAGCCTGACGAAAACCACAGGGCAGAATCCATCCAAGTGAAAAACGT
AGTTTTTAAAGCGGACAAGAATCTAAAAAAACGTATTTCAGCTGCCGGATTTGAGAAGTACAATCCAAAGAAACACAATA
AACGGAAATATTAA

Upstream 100 bases:

>100_bases
GCAACCGTCCTGTTATACTTGTGCAATATTCCTGTTACACTTGTCTATCCCGGCTATTACTCAACTGCACCGCAAACAAT
GGCTATTGAAAGGAGTTATT

Downstream 100 bases:

>100_bases
TTGCATGGAATACGATCGAATTTACTCCATCCGGAAAGGAGAATACTTTGCGGATGCGCTAAAACGTGCAGGAAAAGATT
TTATTCCTACCAATTGCATC

Product: putative non-specific DNA-binding protein HU-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSILYKTTRFADTFTGDKETNVRVQLLSWDTLDTKAFVEYLATKYNLSKGEAYKSLSIVLEGMEAVLKDGNILNLDDFGS
FSLNGNFCEDKEPDENHRAESIQVKNVVFKADKNLKKRISAAGFEKYNPKKHNKRKY

Sequences:

>Translated_137_residues
MSILYKTTRFADTFTGDKETNVRVQLLSWDTLDTKAFVEYLATKYNLSKGEAYKSLSIVLEGMEAVLKDGNILNLDDFGS
FSLNGNFCEDKEPDENHRAESIQVKNVVFKADKNLKKRISAAGFEKYNPKKHNKRKY
>Mature_136_residues
SILYKTTRFADTFTGDKETNVRVQLLSWDTLDTKAFVEYLATKYNLSKGEAYKSLSIVLEGMEAVLKDGNILNLDDFGSF
SLNGNFCEDKEPDENHRAESIQVKNVVFKADKNLKKRISAAGFEKYNPKKHNKRKY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15698; Mature: 15567

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILYKTTRFADTFTGDKETNVRVQLLSWDTLDTKAFVEYLATKYNLSKGEAYKSLSIVL
CCEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
EGMEAVLKDGNILNLDDFGSFSLNGNFCEDKEPDENHRAESIQVKNVVFKADKNLKKRIS
HHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHEEEECCHHHHHHHH
AAGFEKYNPKKHNKRKY
HCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SILYKTTRFADTFTGDKETNVRVQLLSWDTLDTKAFVEYLATKYNLSKGEAYKSLSIVL
CEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
EGMEAVLKDGNILNLDDFGSFSLNGNFCEDKEPDENHRAESIQVKNVVFKADKNLKKRIS
HHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHEEEECCHHHHHHHH
AAGFEKYNPKKHNKRKY
HCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA