| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29349840
Identifier: 29349840
GI number: 29349840
Start: 5839859
End: 5840272
Strand: Reverse
Name: 29349840
Synonym: BT_4432
Alternate gene names: NA
Gene position: 5840272-5839859 (Counterclockwise)
Preceding gene: 29349845
Following gene: 29349839
Centisome position: 93.29
GC content: 41.3
Gene sequence:
>414_bases ATGAGCATACTTTACAAAACAACCCGCTTCGCGGATACATTCACAGGAGATAAGGAGACAAATGTCCGGGTACAACTGCT ATCATGGGATACACTGGACACCAAAGCATTCGTAGAATATCTGGCAACCAAATACAACCTATCCAAAGGAGAAGCATACA AAAGCCTCAGCATAGTACTGGAAGGAATGGAAGCCGTACTGAAAGACGGAAACATACTCAATCTGGACGACTTCGGCAGT TTCTCTCTAAACGGAAATTTCTGTGAAGACAAAGAGCCTGACGAAAACCACAGGGCAGAATCCATCCAAGTGAAAAACGT AGTTTTTAAAGCGGACAAGAATCTAAAAAAACGTATTTCAGCTGCCGGATTTGAGAAGTACAATCCAAAGAAACACAATA AACGGAAATATTAA
Upstream 100 bases:
>100_bases GCAACCGTCCTGTTATACTTGTGCAATATTCCTGTTACACTTGTCTATCCCGGCTATTACTCAACTGCACCGCAAACAAT GGCTATTGAAAGGAGTTATT
Downstream 100 bases:
>100_bases TTGCATGGAATACGATCGAATTTACTCCATCCGGAAAGGAGAATACTTTGCGGATGCGCTAAAACGTGCAGGAAAAGATT TTATTCCTACCAATTGCATC
Product: putative non-specific DNA-binding protein HU-1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 136
Protein sequence:
>137_residues MSILYKTTRFADTFTGDKETNVRVQLLSWDTLDTKAFVEYLATKYNLSKGEAYKSLSIVLEGMEAVLKDGNILNLDDFGS FSLNGNFCEDKEPDENHRAESIQVKNVVFKADKNLKKRISAAGFEKYNPKKHNKRKY
Sequences:
>Translated_137_residues MSILYKTTRFADTFTGDKETNVRVQLLSWDTLDTKAFVEYLATKYNLSKGEAYKSLSIVLEGMEAVLKDGNILNLDDFGS FSLNGNFCEDKEPDENHRAESIQVKNVVFKADKNLKKRISAAGFEKYNPKKHNKRKY >Mature_136_residues SILYKTTRFADTFTGDKETNVRVQLLSWDTLDTKAFVEYLATKYNLSKGEAYKSLSIVLEGMEAVLKDGNILNLDDFGSF SLNGNFCEDKEPDENHRAESIQVKNVVFKADKNLKKRISAAGFEKYNPKKHNKRKY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15698; Mature: 15567
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSILYKTTRFADTFTGDKETNVRVQLLSWDTLDTKAFVEYLATKYNLSKGEAYKSLSIVL CCEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH EGMEAVLKDGNILNLDDFGSFSLNGNFCEDKEPDENHRAESIQVKNVVFKADKNLKKRIS HHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHEEEECCHHHHHHHH AAGFEKYNPKKHNKRKY HCCCCCCCCCCCCCCCC >Mature Secondary Structure SILYKTTRFADTFTGDKETNVRVQLLSWDTLDTKAFVEYLATKYNLSKGEAYKSLSIVL CEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH EGMEAVLKDGNILNLDDFGSFSLNGNFCEDKEPDENHRAESIQVKNVVFKADKNLKKRIS HHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHEEEECCHHHHHHHH AAGFEKYNPKKHNKRKY HCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA