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The map label for this gene is ykgB [H]

Identifier: 29349807

GI number: 29349807

Start: 5796101

End: 5797252

Strand: Reverse

Name: ykgB [H]

Synonym: BT_4399

Alternate gene names: 29349807

Gene position: 5797252-5796101 (Counterclockwise)

Preceding gene: 29349808

Following gene: 29349804

Centisome position: 92.6

GC content: 46.18

Gene sequence:

>1152_bases
ATGCTAAAAACTTTTGCAACCATCTGTATTATCGGTATGTTCACATCTAGTTGTACATCAAAAAAGGCTTCCCGGACCGA
AGGCTCCCATGAAGCAGAACAGGACCTGACAATGATTGTCGGTACTTACACTTCGGGAGACAGTAAAGGTCTCTATAGTT
TCCGATTCAATGAAGAAAACGGAACCGCAACCGCACTCAGTGAAGCGGAAGTGGAAAACCCATCTTATCTCGTACCTTCT
GCCGACGGCAAATTCATCTATGCAGTCAGCGAATTCAGCAACGAACAAGCTGCTGCCAACGCATTTGCTTTCAATAAGGA
GGAAGGAACTTTCCGACTGCTGAATACGCAGAAAACCGGAGGCGAAGATCCTTGCTACATCATTACCAACGGAAGTAATG
TGGTTACTGCCAATTACAGTGGAGGAAGCATTTCTGTCTTCCCGATCGATAAGGACGGTTCACTTCTCCCCGCTTCTGAG
GTGGTGAAGTTCAAAGGTTCGGGAGCCGACAAGGAACGTCAGGAGAAACCGCATCTGCATTGTGTCCGCATCACGCCGGA
TGGCAAATACTTATTTGCAGACGATCTGGGCACGGACCAGATACACAAATTTATTGTTAATCCGAATGCAAAGGCAGACA
ATGAAGATGTTTTTCTGAAAGAAGGAAGTCCCGCCTCTTATAAAGTAGAAGCCGGTTCGGGTCCCCGCCATCTGACATTT
GCACCGAATGGAAGCTATGCGTATCTCATCAATGAACTATCGGGAACAGTCATTGCGTTTGAATATAACGACGGAGAGTT
AAAAGAAATTCAGACTATTGCTGCCGACACTGTGGGAGCCAAAGGAAGTGGTGATATTCATATCAGCCCGGACGGCAAAT
TCCTGTATGCAAGTAACCGGCTAAAGGCTGACGGGCTGGCGATCTTCAGTATCCATCCGGAAAACGGTATGCTGACGAAA
GTCGGTTATCAACTGACAGGCATTCACCCGCGCAATTTCATTATCACGCCTAACGGCAAGTATTTGCTGGTGGCTTGTCG
GGATAGTAATGTGATACAGGTTTATGAAAGGGATACGGATACAGGATTACTGACGGATATACGTAAAGATATAAAGGTGG
ACAAGCCTGTCTGCATTAAGTTTGTACCATAA

Upstream 100 bases:

>100_bases
CGTGTCCTCGTAAGGGAACGACAAGGAAACTGCAATCATCTATTATACAAGACATTAGTATAGACTAAGGAAGTTGCTAT
CTAATAAAAAGAACCTATAT

Downstream 100 bases:

>100_bases
ACAGGAAGAAGTACTTGGTTAGCACCGGACTGAAACAAGAGTACGCCGGTCCTAACCAAGAACCAATACTTCCTACCCAA
TCAGACTACGAAAAGCCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MLKTFATICIIGMFTSSCTSKKASRTEGSHEAEQDLTMIVGTYTSGDSKGLYSFRFNEENGTATALSEAEVENPSYLVPS
ADGKFIYAVSEFSNEQAAANAFAFNKEEGTFRLLNTQKTGGEDPCYIITNGSNVVTANYSGGSISVFPIDKDGSLLPASE
VVKFKGSGADKERQEKPHLHCVRITPDGKYLFADDLGTDQIHKFIVNPNAKADNEDVFLKEGSPASYKVEAGSGPRHLTF
APNGSYAYLINELSGTVIAFEYNDGELKEIQTIAADTVGAKGSGDIHISPDGKFLYASNRLKADGLAIFSIHPENGMLTK
VGYQLTGIHPRNFIITPNGKYLLVACRDSNVIQVYERDTDTGLLTDIRKDIKVDKPVCIKFVP

Sequences:

>Translated_383_residues
MLKTFATICIIGMFTSSCTSKKASRTEGSHEAEQDLTMIVGTYTSGDSKGLYSFRFNEENGTATALSEAEVENPSYLVPS
ADGKFIYAVSEFSNEQAAANAFAFNKEEGTFRLLNTQKTGGEDPCYIITNGSNVVTANYSGGSISVFPIDKDGSLLPASE
VVKFKGSGADKERQEKPHLHCVRITPDGKYLFADDLGTDQIHKFIVNPNAKADNEDVFLKEGSPASYKVEAGSGPRHLTF
APNGSYAYLINELSGTVIAFEYNDGELKEIQTIAADTVGAKGSGDIHISPDGKFLYASNRLKADGLAIFSIHPENGMLTK
VGYQLTGIHPRNFIITPNGKYLLVACRDSNVIQVYERDTDTGLLTDIRKDIKVDKPVCIKFVP
>Mature_383_residues
MLKTFATICIIGMFTSSCTSKKASRTEGSHEAEQDLTMIVGTYTSGDSKGLYSFRFNEENGTATALSEAEVENPSYLVPS
ADGKFIYAVSEFSNEQAAANAFAFNKEEGTFRLLNTQKTGGEDPCYIITNGSNVVTANYSGGSISVFPIDKDGSLLPASE
VVKFKGSGADKERQEKPHLHCVRITPDGKYLFADDLGTDQIHKFIVNPNAKADNEDVFLKEGSPASYKVEAGSGPRHLTF
APNGSYAYLINELSGTVIAFEYNDGELKEIQTIAADTVGAKGSGDIHISPDGKFLYASNRLKADGLAIFSIHPENGMLTK
VGYQLTGIHPRNFIITPNGKYLLVACRDSNVIQVYERDTDTGLLTDIRKDIKVDKPVCIKFVP

Specific function: Unknown

COG id: COG2706

COG function: function code G; 3-carboxymuconate cyclase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cycloisomerase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1786983, Length=332, Percent_Identity=30.421686746988, Blast_Score=122, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR019405
- InterPro:   IPR015943 [H]

Pfam domain/function: PF10282 DUF2394 [H]

EC number: NA

Molecular weight: Translated: 41555; Mature: 41555

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTFATICIIGMFTSSCTSKKASRTEGSHEAEQDLTMIVGTYTSGDSKGLYSFRFNEEN
CCCHHEEHHEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCC
GTATALSEAEVENPSYLVPSADGKFIYAVSEFSNEQAAANAFAFNKEEGTFRLLNTQKTG
CCEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHEEEEECCCCEEEEEEECCCC
GEDPCYIITNGSNVVTANYSGGSISVFPIDKDGSLLPASEVVKFKGSGADKERQEKPHLH
CCCCEEEEECCCEEEEEEECCCEEEEEEECCCCCCCCHHHEEEEECCCCCCHHHCCCCEE
CVRITPDGKYLFADDLGTDQIHKFIVNPNAKADNEDVFLKEGSPASYKVEAGSGPRHLTF
EEEECCCCCEEEECCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCCEEEE
APNGSYAYLINELSGTVIAFEYNDGELKEIQTIAADTVGAKGSGDIHISPDGKFLYASNR
CCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCCCEEEECCC
LKADGLAIFSIHPENGMLTKVGYQLTGIHPRNFIITPNGKYLLVACRDSNVIQVYERDTD
CCCCCEEEEEEECCCCEEEEECEEEEEECCCCEEECCCCCEEEEEECCCCEEEEEECCCC
TGLLTDIRKDIKVDKPVCIKFVP
CCHHHHHHHHCCCCCCEEEEECC
>Mature Secondary Structure
MLKTFATICIIGMFTSSCTSKKASRTEGSHEAEQDLTMIVGTYTSGDSKGLYSFRFNEEN
CCCHHEEHHEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCC
GTATALSEAEVENPSYLVPSADGKFIYAVSEFSNEQAAANAFAFNKEEGTFRLLNTQKTG
CCEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHEEEEECCCCEEEEEEECCCC
GEDPCYIITNGSNVVTANYSGGSISVFPIDKDGSLLPASEVVKFKGSGADKERQEKPHLH
CCCCEEEEECCCEEEEEEECCCEEEEEEECCCCCCCCHHHEEEEECCCCCCHHHCCCCEE
CVRITPDGKYLFADDLGTDQIHKFIVNPNAKADNEDVFLKEGSPASYKVEAGSGPRHLTF
EEEECCCCCEEEECCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCCEEEE
APNGSYAYLINELSGTVIAFEYNDGELKEIQTIAADTVGAKGSGDIHISPDGKFLYASNR
CCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCCCEEEECCC
LKADGLAIFSIHPENGMLTKVGYQLTGIHPRNFIITPNGKYLLVACRDSNVIQVYERDTD
CCCCCEEEEEEECCCCEEEEECEEEEEECCCCEEECCCCCEEEEEECCCCEEEEEECCCC
TGLLTDIRKDIKVDKPVCIKFVP
CCHHHHHHHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]