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The map label for this gene is ykgD [C]

Identifier: 29349068

GI number: 29349068

Start: 4744640

End: 4747354

Strand: Reverse

Name: ykgD [C]

Synonym: BT_3660

Alternate gene names: 29349068

Gene position: 4747354-4744640 (Counterclockwise)

Preceding gene: 29349075

Following gene: 29349067

Centisome position: 75.83

GC content: 48.51

Gene sequence:

>2715_bases
ATGGCGGCAAATAACCAGAAAAACACCCGAATACTACTATTCCTCCTCCTGTGTATCAGGATGACACTGACGGTGGACGC
CAACGACTTCCTGTTTACATCGATCAACACGGCACAAGGATTGAGCGACAACCAAATACGCTACATACTCCAACTCCCCG
ACGGAAGAATGGTATTCACCACCAACGGGAATGTCAATCTGTATGACGGCTTACATTTCAGCTACCTTCACCGCACGGCA
GAAGACGTTTCCCCGCTGAAACAGTATGAAGGATGTTACCGCATCTATCAATGCGGAGATTCACTCCTATGGATTAAAGA
TTATCATAAACTGATGTGCATCGATCTCCATCAAGAAAAATACATACCTCACCTTGACTCCTATTTCCGCAGAAAAGAGA
TACACGAACCGGTAGAAGACCTTTTCGTCGACAATTCGGGACGTATCTGGCTACTTACTTCCCAAGAGTTGCGGGAACTG
GAAACAGGCATCCGTCTCACCCTGCCGGAGAATGAACATCGAAAGCTACAGGACATACATTCGGATGAACTTGCGGTTTA
CCTATTCTATCATACCGGTGAAGTCGTTTGCTACGACCCGAAAACCGGGAAACAGTTGTATGACAGAGCTGCTTATCCCG
CCTCCGAACAGGAGAACTTCAACCGTACTTCTCTCGTTGTCAAAAGCAAAAAAGGATTCTACCAGTTACGCAACGGCCGC
AAAGGAGGATTCTTCTACTTTAATCCCCAAAACCGGACATGGGAAAAGCTGTTCGAACAGAACTACACGCTCAACACCCT
GATCATCACTCCACAGGGCGATAAAGCATATATCAGTTGTGTCCACGGTTTCTGGATCATCGACCTCGAAAGCAGGGAAC
AGCAATACATCCCCGTACTGGAAACAAAGAAGGGAAAGCTCGTTTCGACCGAAGTCAGCACCATCTTTCAGGATGCCCAA
GGCGGGTTATGGGTCGGCACACTCAATCGGGGATTACTCTATCATCATCCTGCCACACACAAACTGATTCACGTCAGCCG
CACTGCTTTCCCCGCATCACCGGAAGAGGATGTCGCTGTCAAAGCTTTTGCAGAAGATGATAACGGCAATATCTATCTGA
AAAGCCATTCCACAATCTATCAGTTAGCTGTCGATCAGGACGGTTCACGGACTCTGCTACCTGTACCAGCCTCATCGGTC
TCTGCAGAATTGGCAAAGGAATTAGATCAAAGGGGGGGAAACAAATATTACAGAGGCCAATCATACACCGCTCTATGCAC
CGACACACGGGGCTGGACATGGGCAGGGACAGCCGATGGACTGGAACTCTTCACCGATCAAGAGCAAACACCGGACAGCA
AACCGACCACACAAACAGCAGATAATCAATCCGCCTCACCTAATAAACAAGCCCACCGCATTTTCTATCGTGAAAACGGA
CTGAGCAATAACTTCGTACAATCAATCATCGAAGACAGAAACAACTATATCTGGGTAACTACCAGCAATGGCATTTCACG
CATCCATATCAATCCGGAGAATCAGGAAATCGGCTTTACCAACTTCAATCAACTGGACGGGGCTTTAGAAGAGGAATATA
TACAGGGAGCTATCTTTGAGTCTTCGGACGGTACACTCTATTTCGGAGGCATCGACGGCTTTACCATTTTCCGTCCCGAC
CATAAATCCGCCACTCCGGGCCTGCCTTACAAACCGGTTTTCACCAACTTACATCTCTACGGTGAAAAAGTAAACACGGG
AGAAAAGTACGGAAACCGCATCATCCTGCCACAAGCCGCCCCTTACACAAAGGACCTAGAACTGGACTACAACCAGAACT
TTCTGACCTTCGAATGTTCGGCACTGAACTACGTGAACAGCGAACGCACCTACTACCGCTACCAACTGGAAGGCATCGAC
AAACAATGGATGAACGCTTTCGCCAGCGGACAAGGGAATGCAACAGTCGGCAACGGCATCCTGCAGGCATCCTATACCAA
TCTACCGCCGGGAGATTATACATTCAAAGTCGCTGCATCCGACAACCTGTTACAATGGAACGATAACATCACAAAGATAC
ACGTCACTATCCACGCTCCCTGGTGGAAAACGACTACCGCCTACGTTCTGTATACGGCCTTCGTGTTACTGATTGTCTTA
GCAAGCATCCGCCTCTATATCTATCAGACCAAGAAAAAGATGAAACAGCAACATAAAGAAGAAATCCTGCTGCTCCGCAT
CCGCAACCTGATAGAGCAATGCAACAGCTATGAAGCCGAACAGAAAGCCCGTTCGGAGAAGAAAAGCCACCCTTCCGTCT
GCGACAGGAACGAAACGGCAGATGATAATGAAAAGCCAAACGGCATAGAACCGGACAGTGCAGAATCCGCCTTTTTAGTG
CAAGCGATAGAACTGGTAGAAAAGAACCTTGACGTCAACGGCTACTCCGTAGAGCAACTAAGCCGTGACCTCTGCATGGA
ACGCACCGGACTCTACCGCAAACTGGTGACTTTGCTCGACCAGTCCCCCAGCCTCTTTATCCGCAACATCCGCCTCCAAC
GAGCAGCGCAACTACTTGCCGAAGGCAAACTGAGCGTAACCGAAATAGCGGAGCGTACCGGCTTCAGCAGTTCCAGCTAC
CTAAGCAAATGTTTTCAAGAAATGTATGGATGCCGTCCCTCGGAATATACGGAGAAAGCGAAGAAATCAACCTGA

Upstream 100 bases:

>100_bases
ACATTCCCTCCCGAAACCCTTTACAAAAAGAACAGTTTATCCAAGTATAACCCCGACTTTTTTTATCTTTGCATCATCGA
ACATCATAATCCTTATCCCA

Downstream 100 bases:

>100_bases
TTGTTGTTTGTTTCAACATAGCTATTGTCCGCAAAACGTCCTTCCATCCTACCTTTGCCGTATCATAAAGCACTTAAAGA
AACCATGAAAATGAATCTAA

Product: transcriptional regulator

Products: NA

Alternate protein names: Two-Component System Sensor Histidine Kinase/Response; Sensor Histidine Kinase/Response Regulator; Two Component Regulator Three Y Motif Family; Transcriptional Regulator; GGDEF Domain-Containing Protein; AraC Family Transcriptional Regulator; Response Regulator Receiver Domain Protein; Two-Component System Response Regulator; PAS/PAC Sensor Signal Transduction Histidine Kinase; Response Regulator Receiver; Sensory Box Protein; GGDEF Domain Protein; Histidine Kinase CheY-Like Domain Protein; Two-Component Hybrid Sensor And Regulator; Response Regulator Receiver Domain-Containing Protein; Hpt Sensor Hybrid Histidine Kinase; Transcriptional Regulator Arac Family; Two Component Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family; Two-Component System Sensor Kinase/Response Regulator; Multi-Sensor Hybrid Histidine Kinase; Two-Component Regulator; Integral Membrane Sensor Hybrid Histidine Kinase; Two Component Regulator Propeller Domain Protein; Histidine Kinase DhkJ; Diguanylate Cyclase; Signal Transduction Histidine Kinase LytS; Two Component Transcriptional Regulator AraC Family; GGDEF/EAL Domain Protein; Methyl-Accepting Chemotaxis Sensory Transducer; Two-Component System Sensor Histidine Kinase

Number of amino acids: Translated: 904; Mature: 903

Protein sequence:

>904_residues
MAANNQKNTRILLFLLLCIRMTLTVDANDFLFTSINTAQGLSDNQIRYILQLPDGRMVFTTNGNVNLYDGLHFSYLHRTA
EDVSPLKQYEGCYRIYQCGDSLLWIKDYHKLMCIDLHQEKYIPHLDSYFRRKEIHEPVEDLFVDNSGRIWLLTSQELREL
ETGIRLTLPENEHRKLQDIHSDELAVYLFYHTGEVVCYDPKTGKQLYDRAAYPASEQENFNRTSLVVKSKKGFYQLRNGR
KGGFFYFNPQNRTWEKLFEQNYTLNTLIITPQGDKAYISCVHGFWIIDLESREQQYIPVLETKKGKLVSTEVSTIFQDAQ
GGLWVGTLNRGLLYHHPATHKLIHVSRTAFPASPEEDVAVKAFAEDDNGNIYLKSHSTIYQLAVDQDGSRTLLPVPASSV
SAELAKELDQRGGNKYYRGQSYTALCTDTRGWTWAGTADGLELFTDQEQTPDSKPTTQTADNQSASPNKQAHRIFYRENG
LSNNFVQSIIEDRNNYIWVTTSNGISRIHINPENQEIGFTNFNQLDGALEEEYIQGAIFESSDGTLYFGGIDGFTIFRPD
HKSATPGLPYKPVFTNLHLYGEKVNTGEKYGNRIILPQAAPYTKDLELDYNQNFLTFECSALNYVNSERTYYRYQLEGID
KQWMNAFASGQGNATVGNGILQASYTNLPPGDYTFKVAASDNLLQWNDNITKIHVTIHAPWWKTTTAYVLYTAFVLLIVL
ASIRLYIYQTKKKMKQQHKEEILLLRIRNLIEQCNSYEAEQKARSEKKSHPSVCDRNETADDNEKPNGIEPDSAESAFLV
QAIELVEKNLDVNGYSVEQLSRDLCMERTGLYRKLVTLLDQSPSLFIRNIRLQRAAQLLAEGKLSVTEIAERTGFSSSSY
LSKCFQEMYGCRPSEYTEKAKKST

Sequences:

>Translated_904_residues
MAANNQKNTRILLFLLLCIRMTLTVDANDFLFTSINTAQGLSDNQIRYILQLPDGRMVFTTNGNVNLYDGLHFSYLHRTA
EDVSPLKQYEGCYRIYQCGDSLLWIKDYHKLMCIDLHQEKYIPHLDSYFRRKEIHEPVEDLFVDNSGRIWLLTSQELREL
ETGIRLTLPENEHRKLQDIHSDELAVYLFYHTGEVVCYDPKTGKQLYDRAAYPASEQENFNRTSLVVKSKKGFYQLRNGR
KGGFFYFNPQNRTWEKLFEQNYTLNTLIITPQGDKAYISCVHGFWIIDLESREQQYIPVLETKKGKLVSTEVSTIFQDAQ
GGLWVGTLNRGLLYHHPATHKLIHVSRTAFPASPEEDVAVKAFAEDDNGNIYLKSHSTIYQLAVDQDGSRTLLPVPASSV
SAELAKELDQRGGNKYYRGQSYTALCTDTRGWTWAGTADGLELFTDQEQTPDSKPTTQTADNQSASPNKQAHRIFYRENG
LSNNFVQSIIEDRNNYIWVTTSNGISRIHINPENQEIGFTNFNQLDGALEEEYIQGAIFESSDGTLYFGGIDGFTIFRPD
HKSATPGLPYKPVFTNLHLYGEKVNTGEKYGNRIILPQAAPYTKDLELDYNQNFLTFECSALNYVNSERTYYRYQLEGID
KQWMNAFASGQGNATVGNGILQASYTNLPPGDYTFKVAASDNLLQWNDNITKIHVTIHAPWWKTTTAYVLYTAFVLLIVL
ASIRLYIYQTKKKMKQQHKEEILLLRIRNLIEQCNSYEAEQKARSEKKSHPSVCDRNETADDNEKPNGIEPDSAESAFLV
QAIELVEKNLDVNGYSVEQLSRDLCMERTGLYRKLVTLLDQSPSLFIRNIRLQRAAQLLAEGKLSVTEIAERTGFSSSSY
LSKCFQEMYGCRPSEYTEKAKKST
>Mature_903_residues
AANNQKNTRILLFLLLCIRMTLTVDANDFLFTSINTAQGLSDNQIRYILQLPDGRMVFTTNGNVNLYDGLHFSYLHRTAE
DVSPLKQYEGCYRIYQCGDSLLWIKDYHKLMCIDLHQEKYIPHLDSYFRRKEIHEPVEDLFVDNSGRIWLLTSQELRELE
TGIRLTLPENEHRKLQDIHSDELAVYLFYHTGEVVCYDPKTGKQLYDRAAYPASEQENFNRTSLVVKSKKGFYQLRNGRK
GGFFYFNPQNRTWEKLFEQNYTLNTLIITPQGDKAYISCVHGFWIIDLESREQQYIPVLETKKGKLVSTEVSTIFQDAQG
GLWVGTLNRGLLYHHPATHKLIHVSRTAFPASPEEDVAVKAFAEDDNGNIYLKSHSTIYQLAVDQDGSRTLLPVPASSVS
AELAKELDQRGGNKYYRGQSYTALCTDTRGWTWAGTADGLELFTDQEQTPDSKPTTQTADNQSASPNKQAHRIFYRENGL
SNNFVQSIIEDRNNYIWVTTSNGISRIHINPENQEIGFTNFNQLDGALEEEYIQGAIFESSDGTLYFGGIDGFTIFRPDH
KSATPGLPYKPVFTNLHLYGEKVNTGEKYGNRIILPQAAPYTKDLELDYNQNFLTFECSALNYVNSERTYYRYQLEGIDK
QWMNAFASGQGNATVGNGILQASYTNLPPGDYTFKVAASDNLLQWNDNITKIHVTIHAPWWKTTTAYVLYTAFVLLIVLA
SIRLYIYQTKKKMKQQHKEEILLLRIRNLIEQCNSYEAEQKARSEKKSHPSVCDRNETADDNEKPNGIEPDSAESAFLVQ
AIELVEKNLDVNGYSVEQLSRDLCMERTGLYRKLVTLLDQSPSLFIRNIRLQRAAQLLAEGKLSVTEIAERTGFSSSSYL
SKCFQEMYGCRPSEYTEKAKKST

Specific function: Unknown

COG id: COG3292

COG function: function code T; Predicted periplasmic ligand-binding sensor domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 103384; Mature: 103253

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAANNQKNTRILLFLLLCIRMTLTVDANDFLFTSINTAQGLSDNQIRYILQLPDGRMVFT
CCCCCCCCHHHHHHHHHHHHHEEEECCCCEEEEECCHHCCCCCCCEEEEEECCCCCEEEE
TNGNVNLYDGLHFSYLHRTAEDVSPLKQYEGCYRIYQCGDSLLWIKDYHKLMCIDLHQEK
ECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECHHH
YIPHLDSYFRRKEIHEPVEDLFVDNSGRIWLLTSQELRELETGIRLTLPENEHRKLQDIH
CCCHHHHHHHHHHHHCCHHHHEECCCCCEEEEEHHHHHHHHCCEEEECCCCHHHHHHHCC
SDELAVYLFYHTGEVVCYDPKTGKQLYDRAAYPASEQENFNRTSLVVKSKKGFYQLRNGR
CCCEEEEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHCCCC
KGGFFYFNPQNRTWEKLFEQNYTLNTLIITPQGDKAYISCVHGFWIIDLESREQQYIPVL
CCCEEEECCCCCHHHHHHHCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCEE
ETKKGKLVSTEVSTIFQDAQGGLWVGTLNRGLLYHHPATHKLIHVSRTAFPASPEEDVAV
ECCCCCEEEHHHHHHHHHCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCCCCCCCEEE
KAFAEDDNGNIYLKSHSTIYQLAVDQDGSRTLLPVPASSVSAELAKELDQRGGNKYYRGQ
EEEEECCCCEEEEEECCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC
SYTALCTDTRGWTWAGTADGLELFTDQEQTPDSKPTTQTADNQSASPNKQAHRIFYRENG
CEEEEEECCCCEEEECCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCC
LSNNFVQSIIEDRNNYIWVTTSNGISRIHINPENQEIGFTNFNQLDGALEEEYIQGAIFE
CCHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCCHHHHCCHHHHHHHCCEEEE
SSDGTLYFGGIDGFTIFRPDHKSATPGLPYKPVFTNLHLYGEKVNTGEKYGNRIILPQAA
CCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCEEEECCCC
PYTKDLELDYNQNFLTFECSALNYVNSERTYYRYQLEGIDKQWMNAFASGQGNATVGNGI
CCCCCEEEECCCCEEEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCEECCCE
LQASYTNLPPGDYTFKVAASDNLLQWNDNITKIHVTIHAPWWKTTTAYVLYTAFVLLIVL
EEEECCCCCCCCEEEEEECCCCEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
ASIRLYIYQTKKKMKQQHKEEILLLRIRNLIEQCNSYEAEQKARSEKKSHPSVCDRNETA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC
DDNEKPNGIEPDSAESAFLVQAIELVEKNLDVNGYSVEQLSRDLCMERTGLYRKLVTLLD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHC
QSPSLFIRNIRLQRAAQLLAEGKLSVTEIAERTGFSSSSYLSKCFQEMYGCRPSEYTEKA
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHH
KKST
HCCC
>Mature Secondary Structure 
AANNQKNTRILLFLLLCIRMTLTVDANDFLFTSINTAQGLSDNQIRYILQLPDGRMVFT
CCCCCCCHHHHHHHHHHHHHEEEECCCCEEEEECCHHCCCCCCCEEEEEECCCCCEEEE
TNGNVNLYDGLHFSYLHRTAEDVSPLKQYEGCYRIYQCGDSLLWIKDYHKLMCIDLHQEK
ECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECHHH
YIPHLDSYFRRKEIHEPVEDLFVDNSGRIWLLTSQELRELETGIRLTLPENEHRKLQDIH
CCCHHHHHHHHHHHHCCHHHHEECCCCCEEEEEHHHHHHHHCCEEEECCCCHHHHHHHCC
SDELAVYLFYHTGEVVCYDPKTGKQLYDRAAYPASEQENFNRTSLVVKSKKGFYQLRNGR
CCCEEEEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHCCCC
KGGFFYFNPQNRTWEKLFEQNYTLNTLIITPQGDKAYISCVHGFWIIDLESREQQYIPVL
CCCEEEECCCCCHHHHHHHCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCEE
ETKKGKLVSTEVSTIFQDAQGGLWVGTLNRGLLYHHPATHKLIHVSRTAFPASPEEDVAV
ECCCCCEEEHHHHHHHHHCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCCCCCCCEEE
KAFAEDDNGNIYLKSHSTIYQLAVDQDGSRTLLPVPASSVSAELAKELDQRGGNKYYRGQ
EEEEECCCCEEEEEECCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEECCC
SYTALCTDTRGWTWAGTADGLELFTDQEQTPDSKPTTQTADNQSASPNKQAHRIFYRENG
CEEEEEECCCCEEEECCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCC
LSNNFVQSIIEDRNNYIWVTTSNGISRIHINPENQEIGFTNFNQLDGALEEEYIQGAIFE
CCHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCCHHHHCCHHHHHHHCCEEEE
SSDGTLYFGGIDGFTIFRPDHKSATPGLPYKPVFTNLHLYGEKVNTGEKYGNRIILPQAA
CCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCEEEECCCC
PYTKDLELDYNQNFLTFECSALNYVNSERTYYRYQLEGIDKQWMNAFASGQGNATVGNGI
CCCCCEEEECCCCEEEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCEECCCE
LQASYTNLPPGDYTFKVAASDNLLQWNDNITKIHVTIHAPWWKTTTAYVLYTAFVLLIVL
EEEECCCCCCCCEEEEEECCCCEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
ASIRLYIYQTKKKMKQQHKEEILLLRIRNLIEQCNSYEAEQKARSEKKSHPSVCDRNETA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC
DDNEKPNGIEPDSAESAFLVQAIELVEKNLDVNGYSVEQLSRDLCMERTGLYRKLVTLLD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHC
QSPSLFIRNIRLQRAAQLLAEGKLSVTEIAERTGFSSSSYLSKCFQEMYGCRPSEYTEKA
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHH
KKST
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA