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The map label for this gene is araC [H]

Identifier: 29349075

GI number: 29349075

Start: 4756866

End: 4757726

Strand: Reverse

Name: araC [H]

Synonym: BT_3667

Alternate gene names: 29349075

Gene position: 4757726-4756866 (Counterclockwise)

Preceding gene: 29349082

Following gene: 29349068

Centisome position: 76.0

GC content: 34.38

Gene sequence:

>861_bases
ATGGCTTCATTTGTTGATAAATTGCACCCGCTTGTTTTGAACATAGGTTTGGCTATTCATAATGCCGATTGGAACTGGAA
AAATGTCAATAGCCCTTTTACACGTTTATATTATGTGACAGAAGGTACTGCACAAGTCTTAATATCGGGTAAAACTCAGA
TTCTAAAAGCTAACCACATGTATTTTATTCCAGCTTTTACCAAACATAGCTATATCTGCAACTCTTATTTTTCCCACTAT
TATCTGCATATATATGAAGAACACCAGTCAGACAGCAACTTACTGGACAATTGGGATTTTCCAATAGAAATCCCCGCTGT
CGAAATAGATTTGGCATTATTTCAGCGGCTCTGCACTATAAATCCACATATGACCTTACAGAAATCAGACCCGACTTCTT
ACGATAACAATTACACCCTTATGCAGAATCTGCTAAAAAACAAACAACGGACCTTGTCTGATAAGATAGAATCAAGAGGT
ATTGTATATCAATTGCTAGCACGTTTCCTAAAAAGAGCTCAAGTAAAAATGGAATTAAAAGACAATCGGATAGAAGAAGC
CATTCACTATATCCGTAAACATATAAATGAAACTATTGATTTAAGAGTACTCGCTGAGAATTCCTGTTTATCAAAAGACC
ATTTTATTCGTCTATTCAAAAAAGAGACAGGAGATACCCCCTTAAAATACATTAACCGTAAGAAAATAGAAAAAGCTCAA
CTCATACTAATAACCGATGATATGTCAATCAAAAATGTTGCATTAAATCTTGCTTTTGAAGATTATTCATACTTCAACAG
GTTATTCAAAAAAATCACAGGTATTACTCCCCAAGAATATCGCACCTCTTATCACTCTTAA

Upstream 100 bases:

>100_bases
ATAAAACAATATCGATATATTATTTAAAATTATCGACATCAAAAGAGTTATATTTATTTTTTATATATCTTTATCTTCAC
ATTAATAAACCCTATATGCT

Downstream 100 bases:

>100_bases
GCAGAAAAAAAGGAATAGCAACTTTCACACTATTCCTTTTTTCTCAACACGTAGTAAACGATTACGTTATCCTCAACTAA
TCTTCATACAGATAAAACAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MASFVDKLHPLVLNIGLAIHNADWNWKNVNSPFTRLYYVTEGTAQVLISGKTQILKANHMYFIPAFTKHSYICNSYFSHY
YLHIYEEHQSDSNLLDNWDFPIEIPAVEIDLALFQRLCTINPHMTLQKSDPTSYDNNYTLMQNLLKNKQRTLSDKIESRG
IVYQLLARFLKRAQVKMELKDNRIEEAIHYIRKHINETIDLRVLAENSCLSKDHFIRLFKKETGDTPLKYINRKKIEKAQ
LILITDDMSIKNVALNLAFEDYSYFNRLFKKITGITPQEYRTSYHS

Sequences:

>Translated_286_residues
MASFVDKLHPLVLNIGLAIHNADWNWKNVNSPFTRLYYVTEGTAQVLISGKTQILKANHMYFIPAFTKHSYICNSYFSHY
YLHIYEEHQSDSNLLDNWDFPIEIPAVEIDLALFQRLCTINPHMTLQKSDPTSYDNNYTLMQNLLKNKQRTLSDKIESRG
IVYQLLARFLKRAQVKMELKDNRIEEAIHYIRKHINETIDLRVLAENSCLSKDHFIRLFKKETGDTPLKYINRKKIEKAQ
LILITDDMSIKNVALNLAFEDYSYFNRLFKKITGITPQEYRTSYHS
>Mature_285_residues
ASFVDKLHPLVLNIGLAIHNADWNWKNVNSPFTRLYYVTEGTAQVLISGKTQILKANHMYFIPAFTKHSYICNSYFSHYY
LHIYEEHQSDSNLLDNWDFPIEIPAVEIDLALFQRLCTINPHMTLQKSDPTSYDNNYTLMQNLLKNKQRTLSDKIESRGI
VYQLLARFLKRAQVKMELKDNRIEEAIHYIRKHINETIDLRVLAENSCLSKDHFIRLFKKETGDTPLKYINRKKIEKAQL
ILITDDMSIKNVALNLAFEDYSYFNRLFKKITGITPQEYRTSYHS

Specific function: This protein controls the expression of at least six genes that are involved in the transport and catabolism of L- arabinose. It regulates initiation of transcription of the araBAD operon and it also controls its own synthesis. The L-arabinose operon disp

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=104, Percent_Identity=37.5, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1789993, Length=103, Percent_Identity=33.0097087378641, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790391, Length=132, Percent_Identity=32.5757575757576, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33692; Mature: 33561

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFVDKLHPLVLNIGLAIHNADWNWKNVNSPFTRLYYVTEGTAQVLISGKTQILKANHM
CCCHHHHHHHHHHEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEEEEECCEEEEEECCE
YFIPAFTKHSYICNSYFSHYYLHIYEEHQSDSNLLDNWDFPIEIPAVEIDLALFQRLCTI
EEEEECCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEECCEEEECHHHHHHHHCC
NPHMTLQKSDPTSYDNNYTLMQNLLKNKQRTLSDKIESRGIVYQLLARFLKRAQVKMELK
CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEHHH
DNRIEEAIHYIRKHINETIDLRVLAENSCLSKDHFIRLFKKETGDTPLKYINRKKIEKAQ
HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCEE
LILITDDMSIKNVALNLAFEDYSYFNRLFKKITGITPQEYRTSYHS
EEEEECCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure 
ASFVDKLHPLVLNIGLAIHNADWNWKNVNSPFTRLYYVTEGTAQVLISGKTQILKANHM
CCHHHHHHHHHHEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEEEEECCEEEEEECCE
YFIPAFTKHSYICNSYFSHYYLHIYEEHQSDSNLLDNWDFPIEIPAVEIDLALFQRLCTI
EEEEECCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEECCEEEECHHHHHHHHCC
NPHMTLQKSDPTSYDNNYTLMQNLLKNKQRTLSDKIESRGIVYQLLARFLKRAQVKMELK
CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEHHH
DNRIEEAIHYIRKHINETIDLRVLAENSCLSKDHFIRLFKKETGDTPLKYINRKKIEKAQ
HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCEE
LILITDDMSIKNVALNLAFEDYSYFNRLFKKITGITPQEYRTSYHS
EEEEECCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]