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The map label for this gene is xylR [H]

Identifier: 29349017

GI number: 29349017

Start: 4677750

End: 4678895

Strand: Reverse

Name: xylR [H]

Synonym: BT_3609

Alternate gene names: 29349017

Gene position: 4678895-4677750 (Counterclockwise)

Preceding gene: 29349021

Following gene: 29349016

Centisome position: 74.74

GC content: 42.15

Gene sequence:

>1146_bases
ATGATAAAAATACTACTGCTGATCGATTATTCCAGTGAATTTGACAGAAAATTGCTCCGCGGACTTGTACAATATTCCAA
AGAAAACGGACCTTGGCTTTTCTATCGGCTTCCATCCTATTACAGCGGCATGTATGGAGAAAAAGGTATTCTCAAATGGG
CAAAAGAATGGAAAGCTGACGCCATCATCGGACAATGGAACAATGACACCGTCAATCTACTGAAAGAACTGAATATTCCG
ATTGTATTGCAGAATTATCACCATAGAAGCACTACTTACTCCAATCTGACGGGCGACTACAAAGGAACGGGCAGAATGGC
CGCCCAATTCTTCGCCAAGCGGATGTTCCACAACTTTGCTTATTTCGGCATAAACGGAGTTGTCTGGTCTGACGAACGTT
GCGAAGGCTTCCGTCAGGAAGTTAAACGGATAGGCGGCAACTTTTATTGTTTCGAATCCGATAAGCATGAAGACGAAATC
AGAATAGAAGTAAGCCAATGGCTGCAAGAGCTTCCTAAACCCATAGCGTTGTTCTGCTGCGACGACTCACACGCACTATT
CATTTCGGAAACCTGCAAGATAAGTAACATACACATACCGGAAGAAATCTCCCTGTTAGGAGTCGACAATGATGACTTGA
TCTGCAATATTTCCGATCCTCCCATCTCCTCCATAGAACTGGAAGTAGAAAGAGGAGGATATTCCATAGGCAGGCTCATT
CATCAACAAATCAAAAAGGAACATGAAGGGACCTTCAATATCGTCATCAACCCTATCCGCATAGAATTGCGGCAATCCAC
AGAAAAGCATAATATAAAGGACCCTTACATTCTCGAAGTTGTAAAATACATAGAGAGTCATTACAATTCCGACCTGACCA
TAGAGTCTTTGCTGGCACAGATTCCGCTCTCACGCAGAAATTTTGAAGTGAAATTCAAAAATGCGATGCATACTTCCATC
TATCAGTATATCTTAAACTGCCGGGTCAACCATCTGGCCGATTTACTTCTTACTACAGATCGTTCATTGGCAGACATTGC
AACGGAAGCCGGATTCAAAGACTATAATAATATCTCCCGGATTTTCAAAAAGTTCAAAGGATGTTCCCCTTTGGAATATC
GGGAGAAAAAAATCACGAACAGATAA

Upstream 100 bases:

>100_bases
ATACATATCTTCTTCGCAACAAAGTTAGACTATTATAGAAAGAAAACAAACTAATATTTATATATTTGTTTCCATAAACT
TTAATATACCCGCACACACT

Downstream 100 bases:

>100_bases
AAAATAAATTATTCGTTTTTCGAATATAGCTTTTCGTTTTTAGTACCGGAGGCATTACTAAAGTGGCATATCTTTGTTCG
GTAAATGTTAACTCTCAAAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MIKILLLIDYSSEFDRKLLRGLVQYSKENGPWLFYRLPSYYSGMYGEKGILKWAKEWKADAIIGQWNNDTVNLLKELNIP
IVLQNYHHRSTTYSNLTGDYKGTGRMAAQFFAKRMFHNFAYFGINGVVWSDERCEGFRQEVKRIGGNFYCFESDKHEDEI
RIEVSQWLQELPKPIALFCCDDSHALFISETCKISNIHIPEEISLLGVDNDDLICNISDPPISSIELEVERGGYSIGRLI
HQQIKKEHEGTFNIVINPIRIELRQSTEKHNIKDPYILEVVKYIESHYNSDLTIESLLAQIPLSRRNFEVKFKNAMHTSI
YQYILNCRVNHLADLLLTTDRSLADIATEAGFKDYNNISRIFKKFKGCSPLEYREKKITNR

Sequences:

>Translated_381_residues
MIKILLLIDYSSEFDRKLLRGLVQYSKENGPWLFYRLPSYYSGMYGEKGILKWAKEWKADAIIGQWNNDTVNLLKELNIP
IVLQNYHHRSTTYSNLTGDYKGTGRMAAQFFAKRMFHNFAYFGINGVVWSDERCEGFRQEVKRIGGNFYCFESDKHEDEI
RIEVSQWLQELPKPIALFCCDDSHALFISETCKISNIHIPEEISLLGVDNDDLICNISDPPISSIELEVERGGYSIGRLI
HQQIKKEHEGTFNIVINPIRIELRQSTEKHNIKDPYILEVVKYIESHYNSDLTIESLLAQIPLSRRNFEVKFKNAMHTSI
YQYILNCRVNHLADLLLTTDRSLADIATEAGFKDYNNISRIFKKFKGCSPLEYREKKITNR
>Mature_381_residues
MIKILLLIDYSSEFDRKLLRGLVQYSKENGPWLFYRLPSYYSGMYGEKGILKWAKEWKADAIIGQWNNDTVNLLKELNIP
IVLQNYHHRSTTYSNLTGDYKGTGRMAAQFFAKRMFHNFAYFGINGVVWSDERCEGFRQEVKRIGGNFYCFESDKHEDEI
RIEVSQWLQELPKPIALFCCDDSHALFISETCKISNIHIPEEISLLGVDNDDLICNISDPPISSIELEVERGGYSIGRLI
HQQIKKEHEGTFNIVINPIRIELRQSTEKHNIKDPYILEVVKYIESHYNSDLTIESLLAQIPLSRRNFEVKFKNAMHTSI
YQYILNCRVNHLADLLLTTDRSLADIATEAGFKDYNNISRIFKKFKGCSPLEYREKKITNR

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=386, Percent_Identity=23.8341968911917, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1790559, Length=220, Percent_Identity=24.0909090909091, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 44388; Mature: 44388

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKILLLIDYSSEFDRKLLRGLVQYSKENGPWLFYRLPSYYSGMYGEKGILKWAKEWKAD
CEEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCHHHHHHHHHCCCC
AIIGQWNNDTVNLLKELNIPIVLQNYHHRSTTYSNLTGDYKGTGRMAAQFFAKRMFHNFA
EEEECCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
YFGINGVVWSDERCEGFRQEVKRIGGNFYCFESDKHEDEIRIEVSQWLQELPKPIALFCC
EEECCEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEHHHHHHHCCCCEEEEEE
DDSHALFISETCKISNIHIPEEISLLGVDNDDLICNISDPPISSIELEVERGGYSIGRLI
CCCCEEEEECCCEECCCCCCCCEEEEECCCCCEEEECCCCCCCCEEEEEECCCCHHHHHH
HQQIKKEHEGTFNIVINPIRIELRQSTEKHNIKDPYILEVVKYIESHYNSDLTIESLLAQ
HHHHHHHCCCEEEEEEEEEEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
IPLSRRNFEVKFKNAMHTSIYQYILNCRVNHLADLLLTTDRSLADIATEAGFKDYNNISR
CCCCCCCEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHH
IFKKFKGCSPLEYREKKITNR
HHHHHCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MIKILLLIDYSSEFDRKLLRGLVQYSKENGPWLFYRLPSYYSGMYGEKGILKWAKEWKAD
CEEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCHHHHHHHHHCCCC
AIIGQWNNDTVNLLKELNIPIVLQNYHHRSTTYSNLTGDYKGTGRMAAQFFAKRMFHNFA
EEEECCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
YFGINGVVWSDERCEGFRQEVKRIGGNFYCFESDKHEDEIRIEVSQWLQELPKPIALFCC
EEECCEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEHHHHHHHCCCCEEEEEE
DDSHALFISETCKISNIHIPEEISLLGVDNDDLICNISDPPISSIELEVERGGYSIGRLI
CCCCEEEEECCCEECCCCCCCCEEEEECCCCCEEEECCCCCCCCEEEEEECCCCHHHHHH
HQQIKKEHEGTFNIVINPIRIELRQSTEKHNIKDPYILEVVKYIESHYNSDLTIESLLAQ
HHHHHHHCCCEEEEEEEEEEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
IPLSRRNFEVKFKNAMHTSIYQYILNCRVNHLADLLLTTDRSLADIATEAGFKDYNNISR
CCCCCCCEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHH
IFKKFKGCSPLEYREKKITNR
HHHHHCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]