| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29348846
Identifier: 29348846
GI number: 29348846
Start: 4427720
End: 4429381
Strand: Reverse
Name: 29348846
Synonym: BT_3437
Alternate gene names: NA
Gene position: 4429381-4427720 (Counterclockwise)
Preceding gene: 29348847
Following gene: 29348845
Centisome position: 70.75
GC content: 32.01
Gene sequence:
>1662_bases ATGAAACAATCTAATATCTCCGCAACAATAATAATGTCAATAATATCATTTGCATCCTGCACAAATGATATTGAGAATCT CGACATTATTCCGACAAATAATGGACAAAATACAGAAGGCAACATTATACTACAAGAAAGAAATCCAAATCTTCCCTTAC CCTTAATAAAGAAGTTCATATTAAACAAGCCACAAACCAGAAATAGCGTTTCAGGCGAAGACAGAACCTTCCTTGGATAC AGTTATAAAATAAAAAATGGGGATTATATACAAGGAAGCATAAATAGTTTAGGCTTTCCAATAATAGACATTGACTCTAT AAGAAAATATAGACCTTCTTATCTACAAGAGAAACTTATAACTGTAACAGAGACTAATATTTTCACTTATAATAATCTCG ACAAATACTTGTATGATTCAAGATTTGGCAAAAAGGTATCATCTGAGTTTACTTTCAATCCTAAAGTTTTCGCAACAGAA AAAAAGGAAGCAATCACAAAGTTATTCGGTAATATAGAAAAAGCTACTTATGGTAAACTCGAAGTTTCTTTTCTAAAAGG GCAATCCACATTAAATCATTTACCAAGTTCAAGACTATGGTATATAAGCCAATTTCAGAATCATATTTTCACAAATATCC TATATAATGCCCCAATGGCATCCATACTTAACGAATTTGGTGAATTCATATTAACAGATTATTTTACAGGAGGAAAGGTT TATGCCTTATTCGCAAGCAAAGCCAAAGAAGGGACAACCGCTCAACAAAAAGAAGATGACATGTATACTTCTATAAACAC TTCAGTAATTAACCTCAATAACGCTACTAGTATTAATTTAGGTTTCAACGGTTCCAACTTTGACGCAACAAAAACCTTTA AAAGTACAGATACTTATTTAGATATGAAAACATTTGGAGGGGAAGTAAGTCAAAGCGTAGCAATAAATACAAAAGTTTCT AATATCAATATAGACTTAACACCGTGGAGATATTCTTTAAAAGACATGGCTAACAATACAATGATAGATATAGCAGACAA TAGCCTGTATCCTCTATCAGCCTTTGTACTCGAGCAAAATTTCAAACAACGCCTTGATGACACCTTCAACGAGATACTAC CTGCGAACAAAGAGCTAGTACCTCCACGCATTGAAATCGTGAGAGTTCTCGCCCGTACAACACCTTCCAATGAAGCTCTT TATGATGTAGCAGCCGTTTTAGTTACAAGGCAAACAGATAGAATAATATTGAGTGACGCTATGGCGTCATCCGCTACAGA TGAAGAATTAAGAAAAAATGAGAACAATGAAGTTTTCATGCAGAAAGTAGAAAAAATAGCAACTGAAAAATCTAAGTTTT TTAGTTCTGACATAGAAATATCATATAATAAAGAGACTAAACTGAATCCTACTTTAAAATCACCATTATGCATAGAACTA ACAGGATTTAATGAAAGAAACTTTTATAGATTTTATTATGAAAAGACTAATATTGAATATATTTACGATCCTGCTACTCA TCTTTGCTTATCATATTACATAAATAAAGGGGACGATAGAATCTTAGATATCTATGGCATTAGAAACTGGATAGAATCAC TACCTGAAAAGAAAATATCAATAACAACATTAGCAAATTCATATAAAATCATTGGATTATAG
Upstream 100 bases:
>100_bases GGAGTCTTACATCTGTCTAATAGCAGATGCATTATTCCTTTTTATTACTATCAAAATCTTCTTATTAATAAAATTCACCA AAGTATCAACCATAAGAAAC
Downstream 100 bases:
>100_bases ACATTGAGGATAATCGCTAAAACACGAAATCAAGTAGACATCAACTCATATAAAGACAATAATTCATTTGTCCTGTTAGA GTTGAAAACAGATGCTTATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 553; Mature: 553
Protein sequence:
>553_residues MKQSNISATIIMSIISFASCTNDIENLDIIPTNNGQNTEGNIILQERNPNLPLPLIKKFILNKPQTRNSVSGEDRTFLGY SYKIKNGDYIQGSINSLGFPIIDIDSIRKYRPSYLQEKLITVTETNIFTYNNLDKYLYDSRFGKKVSSEFTFNPKVFATE KKEAITKLFGNIEKATYGKLEVSFLKGQSTLNHLPSSRLWYISQFQNHIFTNILYNAPMASILNEFGEFILTDYFTGGKV YALFASKAKEGTTAQQKEDDMYTSINTSVINLNNATSINLGFNGSNFDATKTFKSTDTYLDMKTFGGEVSQSVAINTKVS NINIDLTPWRYSLKDMANNTMIDIADNSLYPLSAFVLEQNFKQRLDDTFNEILPANKELVPPRIEIVRVLARTTPSNEAL YDVAAVLVTRQTDRIILSDAMASSATDEELRKNENNEVFMQKVEKIATEKSKFFSSDIEISYNKETKLNPTLKSPLCIEL TGFNERNFYRFYYEKTNIEYIYDPATHLCLSYYINKGDDRILDIYGIRNWIESLPEKKISITTLANSYKIIGL
Sequences:
>Translated_553_residues MKQSNISATIIMSIISFASCTNDIENLDIIPTNNGQNTEGNIILQERNPNLPLPLIKKFILNKPQTRNSVSGEDRTFLGY SYKIKNGDYIQGSINSLGFPIIDIDSIRKYRPSYLQEKLITVTETNIFTYNNLDKYLYDSRFGKKVSSEFTFNPKVFATE KKEAITKLFGNIEKATYGKLEVSFLKGQSTLNHLPSSRLWYISQFQNHIFTNILYNAPMASILNEFGEFILTDYFTGGKV YALFASKAKEGTTAQQKEDDMYTSINTSVINLNNATSINLGFNGSNFDATKTFKSTDTYLDMKTFGGEVSQSVAINTKVS NINIDLTPWRYSLKDMANNTMIDIADNSLYPLSAFVLEQNFKQRLDDTFNEILPANKELVPPRIEIVRVLARTTPSNEAL YDVAAVLVTRQTDRIILSDAMASSATDEELRKNENNEVFMQKVEKIATEKSKFFSSDIEISYNKETKLNPTLKSPLCIEL TGFNERNFYRFYYEKTNIEYIYDPATHLCLSYYINKGDDRILDIYGIRNWIESLPEKKISITTLANSYKIIGL >Mature_553_residues MKQSNISATIIMSIISFASCTNDIENLDIIPTNNGQNTEGNIILQERNPNLPLPLIKKFILNKPQTRNSVSGEDRTFLGY SYKIKNGDYIQGSINSLGFPIIDIDSIRKYRPSYLQEKLITVTETNIFTYNNLDKYLYDSRFGKKVSSEFTFNPKVFATE KKEAITKLFGNIEKATYGKLEVSFLKGQSTLNHLPSSRLWYISQFQNHIFTNILYNAPMASILNEFGEFILTDYFTGGKV YALFASKAKEGTTAQQKEDDMYTSINTSVINLNNATSINLGFNGSNFDATKTFKSTDTYLDMKTFGGEVSQSVAINTKVS NINIDLTPWRYSLKDMANNTMIDIADNSLYPLSAFVLEQNFKQRLDDTFNEILPANKELVPPRIEIVRVLARTTPSNEAL YDVAAVLVTRQTDRIILSDAMASSATDEELRKNENNEVFMQKVEKIATEKSKFFSSDIEISYNKETKLNPTLKSPLCIEL TGFNERNFYRFYYEKTNIEYIYDPATHLCLSYYINKGDDRILDIYGIRNWIESLPEKKISITTLANSYKIIGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62992; Mature: 62992
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQSNISATIIMSIISFASCTNDIENLDIIPTNNGQNTEGNIILQERNPNLPLPLIKKFI CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHH LNKPQTRNSVSGEDRTFLGYSYKIKNGDYIQGSINSLGFPIIDIDSIRKYRPSYLQEKLI CCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHCCCCCEEEHHHHHHCCHHHHHHHEE TVTETNIFTYNNLDKYLYDSRFGKKVSSEFTFNPKVFATEKKEAITKLFGNIEKATYGKL EEEECEEEEECCCHHHHHHHHHCCHHCCCEECCCEEEECCHHHHHHHHHCCCCCCCCCEE EVSFLKGQSTLNHLPSSRLWYISQFQNHIFTNILYNAPMASILNEFGEFILTDYFTGGKV EEEEECCCHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEHHCCCCCEE YALFASKAKEGTTAQQKEDDMYTSINTSVINLNNATSINLGFNGSNFDATKTFKSTDTYL EEEEECCCCCCCCCHHHCCCHHEECCCEEEEECCCEEEEECCCCCCCCCCEEECCCCCEE DMKTFGGEVSQSVAINTKVSNINIDLTPWRYSLKDMANNTMIDIADNSLYPLSAFVLEQN EHHHCCCCCCCEEEEEEEEEEEEEEECCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH FKQRLDDTFNEILPANKELVPPRIEIVRVLARTTPSNEALYDVAAVLVTRQTDRIILSDA HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEHH MASSATDEELRKNENNEVFMQKVEKIATEKSKFFSSDIEISYNKETKLNPTLKSPLCIEL HHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEE TGFNERNFYRFYYEKTNIEYIYDPATHLCLSYYINKGDDRILDIYGIRNWIESLPEKKIS ECCCCCCEEEEEEEECCCEEEECCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCEEE ITTLANSYKIIGL EEEECCCEEEEEC >Mature Secondary Structure MKQSNISATIIMSIISFASCTNDIENLDIIPTNNGQNTEGNIILQERNPNLPLPLIKKFI CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHH LNKPQTRNSVSGEDRTFLGYSYKIKNGDYIQGSINSLGFPIIDIDSIRKYRPSYLQEKLI CCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHCCCCCEEEHHHHHHCCHHHHHHHEE TVTETNIFTYNNLDKYLYDSRFGKKVSSEFTFNPKVFATEKKEAITKLFGNIEKATYGKL EEEECEEEEECCCHHHHHHHHHCCHHCCCEECCCEEEECCHHHHHHHHHCCCCCCCCCEE EVSFLKGQSTLNHLPSSRLWYISQFQNHIFTNILYNAPMASILNEFGEFILTDYFTGGKV EEEEECCCHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEHHCCCCCEE YALFASKAKEGTTAQQKEDDMYTSINTSVINLNNATSINLGFNGSNFDATKTFKSTDTYL EEEEECCCCCCCCCHHHCCCHHEECCCEEEEECCCEEEEECCCCCCCCCCEEECCCCCEE DMKTFGGEVSQSVAINTKVSNINIDLTPWRYSLKDMANNTMIDIADNSLYPLSAFVLEQN EHHHCCCCCCCEEEEEEEEEEEEEEECCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH FKQRLDDTFNEILPANKELVPPRIEIVRVLARTTPSNEALYDVAAVLVTRQTDRIILSDA HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEHH MASSATDEELRKNENNEVFMQKVEKIATEKSKFFSSDIEISYNKETKLNPTLKSPLCIEL HHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEE TGFNERNFYRFYYEKTNIEYIYDPATHLCLSYYINKGDDRILDIYGIRNWIESLPEKKIS ECCCCCCEEEEEEEECCCEEEECCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCEEE ITTLANSYKIIGL EEEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA