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The map label for this gene is kdsD [H]

Identifier: 29348715

GI number: 29348715

Start: 4244189

End: 4244794

Strand: Reverse

Name: kdsD [H]

Synonym: BT_3306

Alternate gene names: 29348715

Gene position: 4244794-4244189 (Counterclockwise)

Preceding gene: 29348716

Following gene: 29348714

Centisome position: 67.8

GC content: 48.02

Gene sequence:

>606_bases
ATGATAGACTCCATCAAACAACTCTTGCAACAAGAGGCACAAGCAGTGCTCAATATCCCTGTAACAGACGCTTACGAGAA
AGCAGTACAACTGATTGTAGAACAGATACATCAGAAAAAAGGGAAATTAGTAACTTCCGGCATGGGAAAAGCCGGACAGA
TTGCCATGAACATCGCCACAACCTTCTGCTCCACCGGCATTCCATCGGTCTTCCTGCACCCCAGTGAAGCGCAGCACGGC
GACCTCGGCATCTTACAAAAAAACGATTTGCTCCTGCTTATCTCCAACTCCGGCAAAACACGCGAAATCGTGGAACTGAC
CCGACTGGCACATAATCTGGACCCGGAACTGAAGTTTATCGTTATCACCGGAAATCCCGACAGCCCGCTGGCCAACGAAT
CAAACGTCTGTCTGAGCACCGGTAAACCTGCCGAAGTTTGTACGTTAGGCATGACTCCTACTACATCGACTACCGCCATG
ACCGTCATCGGTGACATACTGGTAGTACAGACAATGAAGAAGACAGGATTCACTATCGAAGAATACTCAAAACGCCATCA
CGGTGGTTATTTGGGCGAAAAATCAAGATCGCTATGCGAAAAGTAA

Upstream 100 bases:

>100_bases
AAGACGTTAGAGGATAAGGGCTTCGCCCGACAATCTTTCTCTACCTATTATGAAACAGCAAACAATCTGGATGAATTAAA
AGAAAAAATAAACTGATTAT

Downstream 100 bases:

>100_bases
TCGGTATCGGAGAAACAATCCTCGATATCATCTTTCGGGGAAACCAGCCTTCCGCAGCCGTACCGGGAGGCTCTGTATTC
AACGGCATCGTATCCCTCGG

Product: putative sugar isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MIDSIKQLLQQEAQAVLNIPVTDAYEKAVQLIVEQIHQKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHG
DLGILQKNDLLLLISNSGKTREIVELTRLAHNLDPELKFIVITGNPDSPLANESNVCLSTGKPAEVCTLGMTPTTSTTAM
TVIGDILVVQTMKKTGFTIEEYSKRHHGGYLGEKSRSLCEK

Sequences:

>Translated_201_residues
MIDSIKQLLQQEAQAVLNIPVTDAYEKAVQLIVEQIHQKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHG
DLGILQKNDLLLLISNSGKTREIVELTRLAHNLDPELKFIVITGNPDSPLANESNVCLSTGKPAEVCTLGMTPTTSTTAM
TVIGDILVVQTMKKTGFTIEEYSKRHHGGYLGEKSRSLCEK
>Mature_201_residues
MIDSIKQLLQQEAQAVLNIPVTDAYEKAVQLIVEQIHQKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHG
DLGILQKNDLLLLISNSGKTREIVELTRLAHNLDPELKFIVITGNPDSPLANESNVCLSTGKPAEVCTLGMTPTTSTTAM
TVIGDILVVQTMKKTGFTIEEYSKRHHGGYLGEKSRSLCEK

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=192, Percent_Identity=42.7083333333333, Blast_Score=145, Evalue=1e-36,
Organism=Escherichia coli, GI87082151, Length=197, Percent_Identity=34.5177664974619, Blast_Score=126, Evalue=9e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 21744; Mature: 21744

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDSIKQLLQQEAQAVLNIPVTDAYEKAVQLIVEQIHQKKGKLVTSGMGKAGQIAMNIAT
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHH
TFCSTGIPSVFLHPSEAQHGDLGILQKNDLLLLISNSGKTREIVELTRLAHNLDPELKFI
HHHHCCCCEEEECCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
VITGNPDSPLANESNVCLSTGKPAEVCTLGMTPTTSTTAMTVIGDILVVQTMKKTGFTIE
EEECCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
EYSKRHHGGYLGEKSRSLCEK
HHHHHHCCCCCCHHHHHHHCC
>Mature Secondary Structure
MIDSIKQLLQQEAQAVLNIPVTDAYEKAVQLIVEQIHQKKGKLVTSGMGKAGQIAMNIAT
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHH
TFCSTGIPSVFLHPSEAQHGDLGILQKNDLLLLISNSGKTREIVELTRLAHNLDPELKFI
HHHHCCCCEEEECCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
VITGNPDSPLANESNVCLSTGKPAEVCTLGMTPTTSTTAMTVIGDILVVQTMKKTGFTIE
EEECCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
EYSKRHHGGYLGEKSRSLCEK
HHHHHHCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]