Click here to switch to the map view.

The map label for this gene is yvdD [H]

Identifier: 29348716

GI number: 29348716

Start: 4244799

End: 4245284

Strand: Reverse

Name: yvdD [H]

Synonym: BT_3307

Alternate gene names: 29348716

Gene position: 4245284-4244799 (Counterclockwise)

Preceding gene: 29348726

Following gene: 29348715

Centisome position: 67.81

GC content: 45.27

Gene sequence:

>486_bases
ATGTACTTTGACAGTGCCCGTCAAATCGGAGAATGGATGGGAAAAGCAGGCAAAACGTTGATTTATGGAGGAGCCAATCT
CGGACTGATGGAATGCGTAGCCCGCGCCGTGAAAGAGAATGGCGGTACGGTCATCGGAGTAGTTCCTGCCAAACTGGAAG
AAAAAGGTAGTGTGAGCACATTACTGGACGAGGTGATTCATACCCGTAACCTGAGCGACCGGAAAGATGTGATAACAGAG
AAGTCGGAGATATTGGTCGCATTGCCTGGTGGTGTAGGTACACTCGACGAGATTTTCCACGTCATAGCCGCCGCCTCTAT
CGGATATCATCAGAAAAAGGTGATCTTCTATAACGAATACGGTTTTTATAATGAACTTCTGGCTGCACTTAAGACGTTAG
AGGATAAGGGCTTCGCCCGACAATCTTTCTCTACCTATTATGAAACAGCAAACAATCTGGATGAATTAAAAGAAAAAATA
AACTGA

Upstream 100 bases:

>100_bases
GTCGTTTATAGAAAATTGCAGATATTTGTAGACTATATTAGCAACAACGTGTATGAAAAAGATAGGAATATTCTGTTCTG
CCTCGGAAAACATTGACAAA

Downstream 100 bases:

>100_bases
TTATATGATAGACTCCATCAAACAACTCTTGCAACAAGAGGCACAAGCAGTGCTCAATATCCCTGTAACAGACGCTTACG
AGAAAGCAGTACAACTGATT

Product: lysine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MYFDSARQIGEWMGKAGKTLIYGGANLGLMECVARAVKENGGTVIGVVPAKLEEKGSVSTLLDEVIHTRNLSDRKDVITE
KSEILVALPGGVGTLDEIFHVIAAASIGYHQKKVIFYNEYGFYNELLAALKTLEDKGFARQSFSTYYETANNLDELKEKI
N

Sequences:

>Translated_161_residues
MYFDSARQIGEWMGKAGKTLIYGGANLGLMECVARAVKENGGTVIGVVPAKLEEKGSVSTLLDEVIHTRNLSDRKDVITE
KSEILVALPGGVGTLDEIFHVIAAASIGYHQKKVIFYNEYGFYNELLAALKTLEDKGFARQSFSTYYETANNLDELKEKI
N
>Mature_161_residues
MYFDSARQIGEWMGKAGKTLIYGGANLGLMECVARAVKENGGTVIGVVPAKLEEKGSVSTLLDEVIHTRNLSDRKDVITE
KSEILVALPGGVGTLDEIFHVIAAASIGYHQKKVIFYNEYGFYNELLAALKTLEDKGFARQSFSTYYETANNLDELKEKI
N

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322406, Length=186, Percent_Identity=29.5698924731183, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005269 [H]

Pfam domain/function: PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 17741; Mature: 17741

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFDSARQIGEWMGKAGKTLIYGGANLGLMECVARAVKENGGTVIGVVPAKLEEKGSVST
CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHH
LLDEVIHTRNLSDRKDVITEKSEILVALPGGVGTLDEIFHVIAAASIGYHQKKVIFYNEY
HHHHHHHHCCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC
GFYNELLAALKTLEDKGFARQSFSTYYETANNLDELKEKIN
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure
MYFDSARQIGEWMGKAGKTLIYGGANLGLMECVARAVKENGGTVIGVVPAKLEEKGSVST
CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHH
LLDEVIHTRNLSDRKDVITEKSEILVALPGGVGTLDEIFHVIAAASIGYHQKKVIFYNEY
HHHHHHHHCCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC
GFYNELLAALKTLEDKGFARQSFSTYYETANNLDELKEKIN
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]