| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29348582
Identifier: 29348582
GI number: 29348582
Start: 4051327
End: 4053774
Strand: Reverse
Name: 29348582
Synonym: BT_3173
Alternate gene names: NA
Gene position: 4053774-4051327 (Counterclockwise)
Preceding gene: 29348590
Following gene: 29348581
Centisome position: 64.75
GC content: 47.34
Gene sequence:
>2448_bases ATGAAGAAACTTTATTCTTTTTTTATCTGCACACTTTTCTCCCTTTCCGCATCATCAATAGGAACTGTTGATTATACCAA AGGACTCTCTGTCTGGTTCGATACTCCCAACAATCTCGACGGGCAAGCTATCTGGCTACGTGCTTCCGGTTCAGGAGCCA ATCCTGACAAAACGTGGGAAAGTCGTTCACTTCCTATCGGAAACGGTAGTCTGGGAGCGAACATCTTAGGGTCGGTGGCT GCCGAACGCATCACTCTCAATGAGAAAACTCTCTGGAAAGGAGGACCGAATACTTCGAAAGGAGCGGAATATTACTGGGA CGTAAACAAACAATCGGCAGGAGTATTAAAAGAAATCCGCCAGGCATTTCTGGATGAAGACAAAGAAAAAGCCGCCCAAC TCACCCGGAACAACTTCAACGGTTTAGCAGCTTACGAAGAGAAAGATGAAACTCCATTCCGTTTCGGTTCGTTCACCACG ATGGGAGAACTTTATGTGGAAACCGGACTCAATGAACTCAGAATGAGTAACTATCGCCGTATCTTGTCATTAGATTCTGC CATGGTTGTGGTGCAGTTCGATAAAGATGGAGTGCAATATCAACGGAAATATTTCATTTCCTATCCGGACAGCGTCATGG TAATGAAATTCACCGCCAACCAATCCGGAAAACAGAACCTTATATTGAGCTATTGCCCCAACAGCGAAGCAAAAAGTAAC CTCAGGGCAGACGGAAAAGACGGACTGGTATATACCGGAGTACTCGATAACAACGGTATGAAGTTTGCCTTCCGAATCAA AGCTATCCACAAAGGAGGAACTCTGGAAGCTGAAAACGACCGCCTTATCGTAAAAGGCGCTGACGAAGTGGTATTTCTGC TCACAGCGGACACCGATTATAAAATGAACTTCAATCCCGATTTCAAAGACCCGAAAACGTATGTAGGCAACGATCCGGAA CAAACCACCCGAATCATGATGGACCAAGCAGTACAAAAAGGATATGATGAACTGTACCGTAATCATGAAGCCGACCATAC GGCGCTGTTCAACCGGGTACGGCTGCAACTCAATCCGGATATAAGCAGTCCCAACCTCCCCACCTACCAACGTCTGGCTA ATTATAAAAAAGGAACCCCGGATTATCAACTGGAACAGTTGTACTATCAATTCGGGCGTTACCTGCTGATAGCCAGTTCG CGCCCCGGCAATATGCCCGCCAATCTGCAAGGTATGTGGCACAACAATCTGGACGGTCCCTGGAGAGTGGATTATCACAA TAACATTAATATCCAGATGAACTACTGGCCTGCCTGCTCCGCCAACCTTTCGGAATGCACATGGCCTTTGATAGACTTTA TACGCAGCCTGGTGAAACCCGGTGAACAAACGGCACAAGCCTACTTCAACGCACGCGGATGGACGGCATCCATCTCTGCC AATATCTTCGGATTTACAGCGCCTTTATCCAGCAATATGATGTCATGGAACCTGAATCCCACCGCAGGCCCATGGCTTGC CACACACATCTGGGAATATTATGACTATACCCGTGATAAGAAATTCCTGAAAGAGATCGGGTATGACCTTATCAAAAGCA GTGCACAATTTGCAGTGGACCATTTATGGCATAAACCCGACGGCACTTATACCGCTGCTCCTTCCACCTCTCCCGAACAC GGACCGATAGACGAGGGAGTAACCTTTGCACATGCCGTAGTGCGTGAAATACTATTGGACGCTATCCAAGCCAGCAAAGA ACTGGGGATCGACTCCAAAGAACGCAAACAATGGGAAAAGATACTGGATAAATTAGTTCCCTACCGCATCGGACGTTACG GGCAGTTAATGGAATGGTCGACCGACATAGACGACCCTGAAGACGAACACCGCCATGTGAACCATCTCTTCGGATTGCAC CCGGGACATACCATTTCGCCCATCACGACCCCCAAACTTGCAGAAGCCGCAAAAGTGGTATTGGAACACCGCGGAGACGG AGCCACCGGATGGAGCATGGGATGGAAACTTAACCAGTGGGCACGCCTTCAGGACGGAAACCATGCTTATAAGTTATACG GCAATCTGTTGAAAAACGGAACACTGGACAATTTATGGGATACCCACGCGCCTTTCCAGATTGACGGAAACTTTGGAGGT ACGGCAGGAATAACCGAAATGCTGTTGCAAAGCCACATGGGATTTATCCAATTGTTGCCAGCCTTGCCGGATGCCTGGAA GAACGGTTCGATAACCGGCATCTGTGCCAAAGGCAATTTCGAAATTTCCATTTCATGGAAAGAAGGGCAACTGGACAAAG CAACCATTCTTTCCGGGTCAGGAACTCCCTGCAATGTAAGATACGGAGATAAAACTCTCTCATTCAGCACCGTGAAAGGG AAGAAATATGAAATCACTTTAGTAGGAAATCTGTTAAAACTGCTGTAA
Upstream 100 bases:
>100_bases CGATTTTTGAAAGCCTATTGAACAAAATTGAAAAAGAGTCAGAACATGGATAAGGAAGAAAAGGAGTACTTTTGCACGTA CTCCTTTAAATTAATTTATT
Downstream 100 bases:
>100_bases ACAGCACCTATTTCATCATATATTCAGCAAAAACCGGCTGAATATATGATGAAAGTATTATCTTTGGTAAACCAAACCAA GGATCAATGTGCCAATCTCA
Product: hypothetical protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Large Secreted Protein; Fibronectin Type III Domain Protein; Twin-Arginine Translocation Pathway Signal; Alpha/Beta Hydrolase Domain-Containing Protein; Alpha-Fucosidase; Glycoside Hydrolase Family Protein; Six-Hairpin Glycosidase; 1 2-Alpha-L-Fucosidase; Ricin B Lectin; Coagulation Factor 5/8 Type Domain-Containing Protein; Trehalose And Maltose Hydrolase-Like Protein; Glycosyl Hydrolase; F5/8 Type C Domain-Containing Protein; Candidate Alpha-L-Fucosidase; Fibronectin Type III Domain-Containing Protein; Glycosyl Hydrolase Family Protein; 1 2-A-L-Fucosidase
Number of amino acids: Translated: 815; Mature: 815
Protein sequence:
>815_residues MKKLYSFFICTLFSLSASSIGTVDYTKGLSVWFDTPNNLDGQAIWLRASGSGANPDKTWESRSLPIGNGSLGANILGSVA AERITLNEKTLWKGGPNTSKGAEYYWDVNKQSAGVLKEIRQAFLDEDKEKAAQLTRNNFNGLAAYEEKDETPFRFGSFTT MGELYVETGLNELRMSNYRRILSLDSAMVVVQFDKDGVQYQRKYFISYPDSVMVMKFTANQSGKQNLILSYCPNSEAKSN LRADGKDGLVYTGVLDNNGMKFAFRIKAIHKGGTLEAENDRLIVKGADEVVFLLTADTDYKMNFNPDFKDPKTYVGNDPE QTTRIMMDQAVQKGYDELYRNHEADHTALFNRVRLQLNPDISSPNLPTYQRLANYKKGTPDYQLEQLYYQFGRYLLIASS RPGNMPANLQGMWHNNLDGPWRVDYHNNINIQMNYWPACSANLSECTWPLIDFIRSLVKPGEQTAQAYFNARGWTASISA NIFGFTAPLSSNMMSWNLNPTAGPWLATHIWEYYDYTRDKKFLKEIGYDLIKSSAQFAVDHLWHKPDGTYTAAPSTSPEH GPIDEGVTFAHAVVREILLDAIQASKELGIDSKERKQWEKILDKLVPYRIGRYGQLMEWSTDIDDPEDEHRHVNHLFGLH PGHTISPITTPKLAEAAKVVLEHRGDGATGWSMGWKLNQWARLQDGNHAYKLYGNLLKNGTLDNLWDTHAPFQIDGNFGG TAGITEMLLQSHMGFIQLLPALPDAWKNGSITGICAKGNFEISISWKEGQLDKATILSGSGTPCNVRYGDKTLSFSTVKG KKYEITLVGNLLKLL
Sequences:
>Translated_815_residues MKKLYSFFICTLFSLSASSIGTVDYTKGLSVWFDTPNNLDGQAIWLRASGSGANPDKTWESRSLPIGNGSLGANILGSVA AERITLNEKTLWKGGPNTSKGAEYYWDVNKQSAGVLKEIRQAFLDEDKEKAAQLTRNNFNGLAAYEEKDETPFRFGSFTT MGELYVETGLNELRMSNYRRILSLDSAMVVVQFDKDGVQYQRKYFISYPDSVMVMKFTANQSGKQNLILSYCPNSEAKSN LRADGKDGLVYTGVLDNNGMKFAFRIKAIHKGGTLEAENDRLIVKGADEVVFLLTADTDYKMNFNPDFKDPKTYVGNDPE QTTRIMMDQAVQKGYDELYRNHEADHTALFNRVRLQLNPDISSPNLPTYQRLANYKKGTPDYQLEQLYYQFGRYLLIASS RPGNMPANLQGMWHNNLDGPWRVDYHNNINIQMNYWPACSANLSECTWPLIDFIRSLVKPGEQTAQAYFNARGWTASISA NIFGFTAPLSSNMMSWNLNPTAGPWLATHIWEYYDYTRDKKFLKEIGYDLIKSSAQFAVDHLWHKPDGTYTAAPSTSPEH GPIDEGVTFAHAVVREILLDAIQASKELGIDSKERKQWEKILDKLVPYRIGRYGQLMEWSTDIDDPEDEHRHVNHLFGLH PGHTISPITTPKLAEAAKVVLEHRGDGATGWSMGWKLNQWARLQDGNHAYKLYGNLLKNGTLDNLWDTHAPFQIDGNFGG TAGITEMLLQSHMGFIQLLPALPDAWKNGSITGICAKGNFEISISWKEGQLDKATILSGSGTPCNVRYGDKTLSFSTVKG KKYEITLVGNLLKLL >Mature_815_residues MKKLYSFFICTLFSLSASSIGTVDYTKGLSVWFDTPNNLDGQAIWLRASGSGANPDKTWESRSLPIGNGSLGANILGSVA AERITLNEKTLWKGGPNTSKGAEYYWDVNKQSAGVLKEIRQAFLDEDKEKAAQLTRNNFNGLAAYEEKDETPFRFGSFTT MGELYVETGLNELRMSNYRRILSLDSAMVVVQFDKDGVQYQRKYFISYPDSVMVMKFTANQSGKQNLILSYCPNSEAKSN LRADGKDGLVYTGVLDNNGMKFAFRIKAIHKGGTLEAENDRLIVKGADEVVFLLTADTDYKMNFNPDFKDPKTYVGNDPE QTTRIMMDQAVQKGYDELYRNHEADHTALFNRVRLQLNPDISSPNLPTYQRLANYKKGTPDYQLEQLYYQFGRYLLIASS RPGNMPANLQGMWHNNLDGPWRVDYHNNINIQMNYWPACSANLSECTWPLIDFIRSLVKPGEQTAQAYFNARGWTASISA NIFGFTAPLSSNMMSWNLNPTAGPWLATHIWEYYDYTRDKKFLKEIGYDLIKSSAQFAVDHLWHKPDGTYTAAPSTSPEH GPIDEGVTFAHAVVREILLDAIQASKELGIDSKERKQWEKILDKLVPYRIGRYGQLMEWSTDIDDPEDEHRHVNHLFGLH PGHTISPITTPKLAEAAKVVLEHRGDGATGWSMGWKLNQWARLQDGNHAYKLYGNLLKNGTLDNLWDTHAPFQIDGNFGG TAGITEMLLQSHMGFIQLLPALPDAWKNGSITGICAKGNFEISISWKEGQLDKATILSGSGTPCNVRYGDKTLSFSTVKG KKYEITLVGNLLKLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91634; Mature: 91634
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLYSFFICTLFSLSASSIGTVDYTKGLSVWFDTPNNLDGQAIWLRASGSGANPDKTWE CHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCC SRSLPIGNGSLGANILGSVAAERITLNEKTLWKGGPNTSKGAEYYWDVNKQSAGVLKEIR CCCCCCCCCCCCHHHHHHHHHHEEEECCCEEECCCCCCCCCCEEEEECCCCCHHHHHHHH QAFLDEDKEKAAQLTRNNFNGLAAYEEKDETPFRFGSFTTMGELYVETGLNELRMSNYRR HHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCCHHHHHHHHHCHHHHHHHHHHH ILSLDSAMVVVQFDKDGVQYQRKYFISYPDSVMVMKFTANQSGKQNLILSYCPNSEAKSN HEECCCEEEEEEECCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCHHHHC LRADGKDGLVYTGVLDNNGMKFAFRIKAIHKGGTLEAENDRLIVKGADEVVFLLTADTDY CCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEECCCEEEEECCCEEEEEEEECCCE KMNFNPDFKDPKTYVGNDPEQTTRIMMDQAVQKGYDELYRNHEADHTALFNRVRLQLNPD EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEEEECCC ISSPNLPTYQRLANYKKGTPDYQLEQLYYQFGRYLLIASSRPGNMPANLQGMWHNNLDGP CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCCCCC WRVDYHNNINIQMNYWPACSANLSECTWPLIDFIRSLVKPGEQTAQAYFNARGWTASISA EEEEECCCEEEEEEECCCCCCCHHHCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEC NIFGFTAPLSSNMMSWNLNPTAGPWLATHIWEYYDYTRDKKFLKEIGYDLIKSSAQFAVD EEEEEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHH HLWHKPDGTYTAAPSTSPEHGPIDEGVTFAHAVVREILLDAIQASKELGIDSKERKQWEK HHEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ILDKLVPYRIGRYGQLMEWSTDIDDPEDEHRHVNHLFGLHPGHTISPITTPKLAEAAKVV HHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHH LEHRGDGATGWSMGWKLNQWARLQDGNHAYKLYGNLLKNGTLDNLWDTHAPFQIDGNFGG HHHCCCCCCCCCCCCCCCCCEECCCCCEEHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC TAGITEMLLQSHMGFIQLLPALPDAWKNGSITGICAKGNFEISISWKEGQLDKATILSGS HHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCEEEECCC GTPCNVRYGDKTLSFSTVKGKKYEITLVGNLLKLL CCEEEEEECCCEEEEEEECCCEEEEEEEHHHHHHC >Mature Secondary Structure MKKLYSFFICTLFSLSASSIGTVDYTKGLSVWFDTPNNLDGQAIWLRASGSGANPDKTWE CHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCC SRSLPIGNGSLGANILGSVAAERITLNEKTLWKGGPNTSKGAEYYWDVNKQSAGVLKEIR CCCCCCCCCCCCHHHHHHHHHHEEEECCCEEECCCCCCCCCCEEEEECCCCCHHHHHHHH QAFLDEDKEKAAQLTRNNFNGLAAYEEKDETPFRFGSFTTMGELYVETGLNELRMSNYRR HHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCCHHHHHHHHHCHHHHHHHHHHH ILSLDSAMVVVQFDKDGVQYQRKYFISYPDSVMVMKFTANQSGKQNLILSYCPNSEAKSN HEECCCEEEEEEECCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCHHHHC LRADGKDGLVYTGVLDNNGMKFAFRIKAIHKGGTLEAENDRLIVKGADEVVFLLTADTDY CCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEECCCEEEEECCCEEEEEEEECCCE KMNFNPDFKDPKTYVGNDPEQTTRIMMDQAVQKGYDELYRNHEADHTALFNRVRLQLNPD EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEEEECCC ISSPNLPTYQRLANYKKGTPDYQLEQLYYQFGRYLLIASSRPGNMPANLQGMWHNNLDGP CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCCCCC WRVDYHNNINIQMNYWPACSANLSECTWPLIDFIRSLVKPGEQTAQAYFNARGWTASISA EEEEECCCEEEEEEECCCCCCCHHHCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEC NIFGFTAPLSSNMMSWNLNPTAGPWLATHIWEYYDYTRDKKFLKEIGYDLIKSSAQFAVD EEEEEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHH HLWHKPDGTYTAAPSTSPEHGPIDEGVTFAHAVVREILLDAIQASKELGIDSKERKQWEK HHEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ILDKLVPYRIGRYGQLMEWSTDIDDPEDEHRHVNHLFGLHPGHTISPITTPKLAEAAKVV HHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHH LEHRGDGATGWSMGWKLNQWARLQDGNHAYKLYGNLLKNGTLDNLWDTHAPFQIDGNFGG HHHCCCCCCCCCCCCCCCCCEECCCCCEEHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC TAGITEMLLQSHMGFIQLLPALPDAWKNGSITGICAKGNFEISISWKEGQLDKATILSGS HHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCEEEECCC GTPCNVRYGDKTLSFSTVKGKKYEITLVGNLLKLL CCEEEEEECCCEEEEEEECCCEEEEEEEHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA