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The map label for this gene is ybjS [C]

Identifier: 29348484

GI number: 29348484

Start: 3899088

End: 3900095

Strand: Reverse

Name: ybjS [C]

Synonym: BT_3075

Alternate gene names: 29348484

Gene position: 3900095-3899088 (Counterclockwise)

Preceding gene: 29348485

Following gene: 29348483

Centisome position: 62.3

GC content: 41.47

Gene sequence:

>1008_bases
ATGGAGAGCATCTTAATAACAGGAGCAAGCGGATTTATAGGAAGTTTTATTGTCGAAGAGGCATTAAAACGAAAGTTTGG
TGTGTGGGCGGGGATTCGTCCCACCAGCAGCAAAAAGTACTTGAAGAACCGGAAGATCCACTTTCTGGAACTGGACTTTG
CTCATCCCAATGAATTGCGTGCCCAACTCTCCGGACATAAAGGAACCTATAATAAGTTTGACTATATCATCCATTGTGCG
GGAGTCACGAAATGTCCGGATAAGAATACTTTTGATTATGTGAATTATCTCCAGACCAAATACTTTATTGATACCCTGAA
AGCGTTGAATATGGTTCCGAAGCAATTCATCTATATCAGTACGCTGAGTGTATTCGGACCTGTACGCGAAAAAGATTATT
CGCCGATAGAAGCCGGTGATGTCCCGATGCCAAATACTGCTTATGGTCTTAGCAAGCTTAAGGCTGAACTTTATATTCAG
AGTATTCCCGGTTTCCCTTATGTTATTTATCGCCCTACAGGAGTTTACGGTCCTCGTGAACTGGATTATTTCCTGATGGC
GAAGTCCATCCGGCAGCATGTTGACTTCTCTGTCGGCTTCCGGCGGCAGGACCTGACTTTTGTTTATGTAAAAGACATTG
TGCAGGCCATCTTTTTAGGAATAGAAAAAAAAGTGACTAGAAGAGCCTATTTTCTGACTGACGGGAAGGTGTATAATAGT
CGTGTATTTTCGGACTTAATACAAAAAGAACTGGGTAATCCGTTTGTTATTCATGTGAAATGTCCATTAATTGTGCTAAA
AGTTATATCTTTGCTCGCTGAATTCATTGCAACACGTTCCGGCAAGAGCAGTACGCTGAATTCTGATAAATATAAAATAA
TGAAACAACGTAACTGGCAATGTGATATAACCCCTGCCATTAATGAGTTAGGGTATGCTCCCGAATATGACTTGGAGAAG
GGAGTCCGTGAAACCATTGACTGGTATAAAAACGAAGGATGGCTTTAG

Upstream 100 bases:

>100_bases
TTATAAGAGAGAATAATTGAGAAATGCAAAATGGCTTTTATTTTATATTTATTGTATCTTTGTAGCATCATTCTTTTCTT
ATACATTGAGGTTATAATTA

Downstream 100 bases:

>100_bases
ACTTATTTAAGCGAGTGGAAACCCGGAAGGGGTTGTTTGCTGTGGAGAAGATAACATTGATTTATAATCTGTTGACCTCC
ATTTTGATTCTGTTCCTGTT

Product: NAD-dependent epimerase/dehydratase family protein

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MESILITGASGFIGSFIVEEALKRKFGVWAGIRPTSSKKYLKNRKIHFLELDFAHPNELRAQLSGHKGTYNKFDYIIHCA
GVTKCPDKNTFDYVNYLQTKYFIDTLKALNMVPKQFIYISTLSVFGPVREKDYSPIEAGDVPMPNTAYGLSKLKAELYIQ
SIPGFPYVIYRPTGVYGPRELDYFLMAKSIRQHVDFSVGFRRQDLTFVYVKDIVQAIFLGIEKKVTRRAYFLTDGKVYNS
RVFSDLIQKELGNPFVIHVKCPLIVLKVISLLAEFIATRSGKSSTLNSDKYKIMKQRNWQCDITPAINELGYAPEYDLEK
GVRETIDWYKNEGWL

Sequences:

>Translated_335_residues
MESILITGASGFIGSFIVEEALKRKFGVWAGIRPTSSKKYLKNRKIHFLELDFAHPNELRAQLSGHKGTYNKFDYIIHCA
GVTKCPDKNTFDYVNYLQTKYFIDTLKALNMVPKQFIYISTLSVFGPVREKDYSPIEAGDVPMPNTAYGLSKLKAELYIQ
SIPGFPYVIYRPTGVYGPRELDYFLMAKSIRQHVDFSVGFRRQDLTFVYVKDIVQAIFLGIEKKVTRRAYFLTDGKVYNS
RVFSDLIQKELGNPFVIHVKCPLIVLKVISLLAEFIATRSGKSSTLNSDKYKIMKQRNWQCDITPAINELGYAPEYDLEK
GVRETIDWYKNEGWL
>Mature_335_residues
MESILITGASGFIGSFIVEEALKRKFGVWAGIRPTSSKKYLKNRKIHFLELDFAHPNELRAQLSGHKGTYNKFDYIIHCA
GVTKCPDKNTFDYVNYLQTKYFIDTLKALNMVPKQFIYISTLSVFGPVREKDYSPIEAGDVPMPNTAYGLSKLKAELYIQ
SIPGFPYVIYRPTGVYGPRELDYFLMAKSIRQHVDFSVGFRRQDLTFVYVKDIVQAIFLGIEKKVTRRAYFLTDGKVYNS
RVFSDLIQKELGNPFVIHVKCPLIVLKVISLLAEFIATRSGKSSTLNSDKYKIMKQRNWQCDITPAINELGYAPEYDLEK
GVRETIDWYKNEGWL

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Homo sapiens, GI7657641, Length=353, Percent_Identity=24.0793201133144, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI87081792, Length=359, Percent_Identity=23.3983286908078, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17568069, Length=348, Percent_Identity=25, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6321437, Length=360, Percent_Identity=22.7777777777778, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 38493; Mature: 38493

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESILITGASGFIGSFIVEEALKRKFGVWAGIRPTSSKKYLKNRKIHFLELDFAHPNELR
CCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEEEEECCCCHHHH
AQLSGHKGTYNKFDYIIHCAGVTKCPDKNTFDYVNYLQTKYFIDTLKALNMVPKQFIYIS
HHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLSVFGPVREKDYSPIEAGDVPMPNTAYGLSKLKAELYIQSIPGFPYVIYRPTGVYGPRE
HHHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCEEEEECCCCCCCHH
LDYFLMAKSIRQHVDFSVGFRRQDLTFVYVKDIVQAIFLGIEKKVTRRAYFLTDGKVYNS
HHHHHHHHHHHHHCCHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHH
RVFSDLIQKELGNPFVIHVKCPLIVLKVISLLAEFIATRSGKSSTLNSDKYKIMKQRNWQ
HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCE
CDITPAINELGYAPEYDLEKGVRETIDWYKNEGWL
EECCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MESILITGASGFIGSFIVEEALKRKFGVWAGIRPTSSKKYLKNRKIHFLELDFAHPNELR
CCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEEEEECCCCHHHH
AQLSGHKGTYNKFDYIIHCAGVTKCPDKNTFDYVNYLQTKYFIDTLKALNMVPKQFIYIS
HHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLSVFGPVREKDYSPIEAGDVPMPNTAYGLSKLKAELYIQSIPGFPYVIYRPTGVYGPRE
HHHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCEEEEECCCCCCCHH
LDYFLMAKSIRQHVDFSVGFRRQDLTFVYVKDIVQAIFLGIEKKVTRRAYFLTDGKVYNS
HHHHHHHHHHHHHCCHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHH
RVFSDLIQKELGNPFVIHVKCPLIVLKVISLLAEFIATRSGKSSTLNSDKYKIMKQRNWQ
HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCE
CDITPAINELGYAPEYDLEKGVRETIDWYKNEGWL
EECCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]