| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29348470
Identifier: 29348470
GI number: 29348470
Start: 3882939
End: 3884216
Strand: Reverse
Name: 29348470
Synonym: BT_3061
Alternate gene names: NA
Gene position: 3884216-3882939 (Counterclockwise)
Preceding gene: 29348471
Following gene: 29348469
Centisome position: 62.04
GC content: 44.6
Gene sequence:
>1278_bases ATGAAACACGGAATCTATACATGCGTTATTCTCATGGCATTTCTTGCTTTATCAGAAAGTGTGTATGCAGTGGTTCCGGT TTTCACGGTTGCGAGTGACACTATCAGGCGGGTGGTGATATATTTCGATCAGGAAGAAACAGATGTTGATTCCTGTTATA AAACTAATAATCAAGAAATTAATGTTTTAGATTCTTTGCTTGAGGAAAGAATAAATTCAAGATATATCACTGCGCTCAAT GTGGTCACTTTTGTATCGCCTGACGGAGATTCGGTTTATAATGCCGCATTATCTGTCCGAAGAAACAATTCGATGAGAGA GTTCTTAAGGCAACGTTATCCGTATGTTGATGTCGAAAAGATTAAACTTACTTCTGAAGGAGAAGACTGGTCTGAACTTC GTAAGTTGGTGGCGTCGGATTCAGACTTGCCGGACCGGGAAGAAGTCTTGATGTTGATAGATTATCATCGGGATAACATC GTGAAGCGAAAAGAACTGTTGCAGAAGTTGAATCAGGGAATGGCTTACCGATATATTGTCCGCAACGTGTTACCTAAGTT GAGACGCGCTGAGATTACGGTTGTCCGCAAAGTTCCGGAAATGGAAAAGAATATTTTTGAACCGGTATCTTCTGTCTCCG GATTGTTTGTTTCAAAGCAGGAAGAGGCGCTTCCGAGCGATCAACCTGATAAGCCGGAGGGAGAAAGTAAAGAGAGTATG GCTTATGAGGTGGTAGTGTCGGAGGCAGAAGGGCCGGTTGAAAGTAAAACGGTGCTTGCAGTGAAGAATAATCTGTTGTA CGACTTGGCGTTGGCGCCAAATCTGGAAGTAGAGATTCCGGTAGGCAAAAGGTGGTCTTTAAATGCTGAATACAAATGCC CGTGGTGGCTCAACAGTAAACACAATTTCTGTTATCAGCTTCTTTCGGGAGGAGTGGAAGGACGTTGCTGGTTGGGCAAT CGTCAGAAGCGCAACCGGTTGACAGGGCATTTTGTTGGGCTTTATGCTGAAGGTGGAATTTACGATTTCCAGTGGAAGGG CGACGGTTATCGGGGCGATTATTACGGAGCTGCGGGAGTGACCTACGGGTATGCGAGGCAACTGGCTCGCCATCTGTCGC TCGAATTTAGCTTCGGCATCGGGTATCTGACAACAGAATATAAGAAATATACTCCTTACGAGGGGGATATCGTGTGGACA ACTAGTGGACGTTATAACTTTATAGGTCCTACCAAGGCGAAAGTCTCTCTGGTATGGCTGATAAAAAGAGGGAGATAA
Upstream 100 bases:
>100_bases CCAATCGTTTCACAGAACCTTCCATGTTCTGTTTTTTGTTCTGCTAGTATGATTTAGTTTATATTATAACTTCTATATTT GTTCACAGAAACGAACAATT
Downstream 100 bases:
>100_bases GGACGTTATGCAAGATACAAGATACATACTTCTTGTGCTTCTGTCCTCGCTGCTGATGCTGACCGGATGTAGCCGTCGCG AACTATTGGATGATTATCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 425; Mature: 425
Protein sequence:
>425_residues MKHGIYTCVILMAFLALSESVYAVVPVFTVASDTIRRVVIYFDQEETDVDSCYKTNNQEINVLDSLLEERINSRYITALN VVTFVSPDGDSVYNAALSVRRNNSMREFLRQRYPYVDVEKIKLTSEGEDWSELRKLVASDSDLPDREEVLMLIDYHRDNI VKRKELLQKLNQGMAYRYIVRNVLPKLRRAEITVVRKVPEMEKNIFEPVSSVSGLFVSKQEEALPSDQPDKPEGESKESM AYEVVVSEAEGPVESKTVLAVKNNLLYDLALAPNLEVEIPVGKRWSLNAEYKCPWWLNSKHNFCYQLLSGGVEGRCWLGN RQKRNRLTGHFVGLYAEGGIYDFQWKGDGYRGDYYGAAGVTYGYARQLARHLSLEFSFGIGYLTTEYKKYTPYEGDIVWT TSGRYNFIGPTKAKVSLVWLIKRGR
Sequences:
>Translated_425_residues MKHGIYTCVILMAFLALSESVYAVVPVFTVASDTIRRVVIYFDQEETDVDSCYKTNNQEINVLDSLLEERINSRYITALN VVTFVSPDGDSVYNAALSVRRNNSMREFLRQRYPYVDVEKIKLTSEGEDWSELRKLVASDSDLPDREEVLMLIDYHRDNI VKRKELLQKLNQGMAYRYIVRNVLPKLRRAEITVVRKVPEMEKNIFEPVSSVSGLFVSKQEEALPSDQPDKPEGESKESM AYEVVVSEAEGPVESKTVLAVKNNLLYDLALAPNLEVEIPVGKRWSLNAEYKCPWWLNSKHNFCYQLLSGGVEGRCWLGN RQKRNRLTGHFVGLYAEGGIYDFQWKGDGYRGDYYGAAGVTYGYARQLARHLSLEFSFGIGYLTTEYKKYTPYEGDIVWT TSGRYNFIGPTKAKVSLVWLIKRGR >Mature_425_residues MKHGIYTCVILMAFLALSESVYAVVPVFTVASDTIRRVVIYFDQEETDVDSCYKTNNQEINVLDSLLEERINSRYITALN VVTFVSPDGDSVYNAALSVRRNNSMREFLRQRYPYVDVEKIKLTSEGEDWSELRKLVASDSDLPDREEVLMLIDYHRDNI VKRKELLQKLNQGMAYRYIVRNVLPKLRRAEITVVRKVPEMEKNIFEPVSSVSGLFVSKQEEALPSDQPDKPEGESKESM AYEVVVSEAEGPVESKTVLAVKNNLLYDLALAPNLEVEIPVGKRWSLNAEYKCPWWLNSKHNFCYQLLSGGVEGRCWLGN RQKRNRLTGHFVGLYAEGGIYDFQWKGDGYRGDYYGAAGVTYGYARQLARHLSLEFSFGIGYLTTEYKKYTPYEGDIVWT TSGRYNFIGPTKAKVSLVWLIKRGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48722; Mature: 48722
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHGIYTCVILMAFLALSESVYAVVPVFTVASDTIRRVVIYFDQEETDVDSCYKTNNQEI CCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHEEEEEEECCCCCCHHHHHHCCCCCH NVLDSLLEERINSRYITALNVVTFVSPDGDSVYNAALSVRRNNSMREFLRQRYPYVDVEK HHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEE IKLTSEGEDWSELRKLVASDSDLPDREEVLMLIDYHRDNIVKRKELLQKLNQGMAYRYIV EEEECCCCCHHHHHHHHHCCCCCCCHHHEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHH RNVLPKLRRAEITVVRKVPEMEKNIFEPVSSVSGLFVSKQEEALPSDQPDKPEGESKESM HHHHHHHHHHHHHEEHHCCHHHHHHHHHHHHHCCEEEECHHHCCCCCCCCCCCCCCCHHE AYEVVVSEAEGPVESKTVLAVKNNLLYDLALAPNLEVEIPVGKRWSLNAEYKCPWWLNSK EEEEEEECCCCCCCCCEEEEEECCEEEEEEECCCCEEEECCCCCCCCCCCEECCEEECCC HNFCYQLLSGGVEGRCWLGNRQKRNRLTGHFVGLYAEGGIYDFQWKGDGYRGDYYGAAGV CHHHHHHHCCCCCCEEEECCCHHHCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCC TYGYARQLARHLSLEFSFGIGYLTTEYKKYTPYEGDIVWTTSGRYNFIGPTKAKVSLVWL HHHHHHHHHHHHCEEEEECCCEEEECCEECCCCCCCEEEEECCCEEECCCCCCEEEEEEE IKRGR EECCC >Mature Secondary Structure MKHGIYTCVILMAFLALSESVYAVVPVFTVASDTIRRVVIYFDQEETDVDSCYKTNNQEI CCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHEEEEEEECCCCCCHHHHHHCCCCCH NVLDSLLEERINSRYITALNVVTFVSPDGDSVYNAALSVRRNNSMREFLRQRYPYVDVEK HHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEE IKLTSEGEDWSELRKLVASDSDLPDREEVLMLIDYHRDNIVKRKELLQKLNQGMAYRYIV EEEECCCCCHHHHHHHHHCCCCCCCHHHEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHH RNVLPKLRRAEITVVRKVPEMEKNIFEPVSSVSGLFVSKQEEALPSDQPDKPEGESKESM HHHHHHHHHHHHHEEHHCCHHHHHHHHHHHHHCCEEEECHHHCCCCCCCCCCCCCCCHHE AYEVVVSEAEGPVESKTVLAVKNNLLYDLALAPNLEVEIPVGKRWSLNAEYKCPWWLNSK EEEEEEECCCCCCCCCEEEEEECCEEEEEEECCCCEEEECCCCCCCCCCCEECCEEECCC HNFCYQLLSGGVEGRCWLGNRQKRNRLTGHFVGLYAEGGIYDFQWKGDGYRGDYYGAAGV CHHHHHHHCCCCCCEEEECCCHHHCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCC TYGYARQLARHLSLEFSFGIGYLTTEYKKYTPYEGDIVWTTSGRYNFIGPTKAKVSLVWL HHHHHHHHHHHHCEEEEECCCEEEECCEECCCCCCCEEEEECCCEEECCCCCCEEEEEEE IKRGR EECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA